Biological Science Faculty Member
Dr. Kenneth A. Taylor
- Office: 306 Kasha Laboratory
- Office: (850) 644-3357
- Lab: Kasha Laboratory
- Lab: (850) 644-4104
- Fax: (850) 644-7244
- Mail code: 4380
- E-mail: email@example.com
Ph.D., University of California (Berkeley), 1975
Graduate Faculty Status
Research and Professional Interests:
Our research uses 3-D electron microscopy (EM) to study structure and function at the resolution of molecules and supramolecular assembly within cells. This aspect of EM includes techniques such as electron crystallography, electron tomography, helical and “single particle” 3-D image reconstruction. Since we specialize in EM, we also spend considerable effort in method development particularly as it pertains to electron tomography (ET). Present efforts at method development are aimed at algorithms to improve the molecular images that we can obtain by ET. We moved from an emphasis on electron crystallography of 2-D arrays to ET to improve our 3-D images obtained from fast frozen, active insect flight muscle (IFM). To study actively contracting IFM, we needed images of individual cross-bridges and that is something that cannot be obtained by any of the other 3DEM techniques. In order to improve signal-to-noise ratio in these 3-D images but still maintaining the ability to distinguish different structures within the muscle lattice, we adapted methods for classifying images that were developed for single particle 3-D reconstruction in order to identify and group self-similar 3-D structures for subsequent averaging. These methods are enabling us to for the first time study the conformations of tension generating cross-bridges in situ.
Our work on rigor IFM revealed at least two different cross-bridge conformations within 2-headed myosin cross-bridges, one of which has a lever arm angle near 90° suggestive of a tension generating conformation. Our reconstructions of rigor muscle also showed a mixture of single headed and double headed cross-bridges. Recently, by swelling the muscle fibers in rigor, we have been able for the first time to see and determine the amount of S2 that is free of the filament backbone and that the can modulate the ability of myosin heads to search for actin. We also found out that the origins of rigor cross-bridges are not as predicted by current models of myosin head action which are based on X-ray crystallography. We have also shown using rapidly frozen rigor fibers after an applied stretch that only a small portion of the cross-bridges respond to a stretch.
The culmination of this work is its application to time resolved studies of contracting muscle. This effort applies the combination of 3-D tomography, X-ray diffraction, muscle mechanics and fast freezing to trap force-bearing cross-bridges in situ. These experiments allow us to build atomic models of the different cross-bridge forms using the crystal structures of myosin and actin. Our first effort shows cross-bridges at all stages of the working stroke as well as cross-bridges in the presumably weak binding states that precede force production. The work suggests that the position of the myosin motor domain on actin changes during the so-called weak to strong binding transition in addition to the well-known movements of the light chain domain lever arm during the powerstroke itself.
A second area of research emphasis is the structural basis of smooth muscle myosin regulation. A major experimental difficulty in any crystallographic imaging method is the production of crystals. Large 2-D crystalline arrays are best suited for electron crystallography. Under certain conditions, water-soluble proteins and extrinsic membrane proteins can be crystallized on lipid monolayers. Our past research was heavily involved in this area of specimen preparation, and we are one of the best at this technique. My laboratory has been using lipid monolayers to produce arrays of cytoskeletal proteins and molecular motors. Our recent work on smooth muscle heavy meromyosin (smHMM), the two-headed soluble fragment of the motor protein myosin, as well as arrays of whole myosin itself explained a large body of biochemical and site directed mutagenesis work that had been previously unexplained. Our 3-D structure of the inhibited conformation of smHMM has now been shown to be general over all myosin II species. Our most recent structure of the cytoplasmic myosin V resulted in the first hypothesis on how cytoplasmic motors are recycled. More recently, we published a model structure for the phosphorylated form of smHMM that made a completely unexpected prediction, later verified by experiment.
My laboratory was a member of the Cell Migration Consortium a large NIH funded research group that is trying to understand cell adhesion and the factors that help cells move from one site to another. One protein heavily involved in cell adhesion is a-actinin. This is an actin crosslinking protein found in all eucaryotic cells and is best known as a crosslinker of actin filaments in striated muscle Z-disks and smooth muscle dense bodies but it also plays a key role in cell-matrix adhesion in migrating cells. We completed a structure of two isoforms of a-actinin and used our lipid monolayer methodology to produce arrays that were used to identify the β1-integrin binding site as well as the vinculin binding sites on a-actinin. This concept of in vitro assembly of membrane associated complexes on lipid monolayers led to our being invited to joinf the Cell Migration Consortium. Our work under the consortium also involved us in the study of integrin conformational changes and has cemented our efforts at using cryoET to elucidate functional roles of membrane proteins.
The final area of research that we are involved in is the structure of viruses, both enveloped as well as icosahedral. We published the first structure of the Env spikes of HIV. These spikes are required for virus entry into the cell and are a target of research into the mechanism of antibody neutralization. Because of the health importance of viruses, we will continue to explore ways of elucidating structure information that might inform treatments for virus pathology.
1) Ping Zhu, Hanspeter Winkler, Kenneth A. Taylor & Kenneth H. Roux. Cryoelectron tomography of HIV-1 envelope spikes: further evidence for tripod-like legs. PLoS Pathogens, 4(11): e1000203. doi:10.1371/journal.ppat.1000203 (2008). PMCID: PMC2805068.
2) Cheri M. Hampton, Jun Liu, Dianne W. Taylor, David J. DeRosier & Kenneth A. Taylor. The 3D structure of villin as a unique F-actin cross-linker. Structure, 16(12), 1882-1891 (2008). PMCID: PMC2782859.
3) Hanspeter Winkler, Ping Zhu, Jun Liu, Feng Ye, Kenneth H. Roux & Kenneth A. Taylor. Tomographic subvolume alignment and subvolume classification applied to myosinV and SIV envelope spikes. J. Struct. Biol. 165(2), 64-77 (2009) PMCID: PMC2656979.
4) Jason O’Donnel, Kenneth A. Taylor & Michael S. Chapman. Adeno-Associated Virus-2 and its primary cellular receptor – cryo-EM structure of a heparin complex. Virology 385, 434–443 (2009). PMCID: PMC2684845.
5) Shenping Wu, Jun Liu, Mary C. Reedy, Hanspeter Winkler, Michael K. Reedy & Kenneth A. Taylor. Methods for identifying and averaging variable molecular conformations in tomograms of actively contracting insect flight muscle. J. Struct. Biol. 168, 485-502 (2009). PMCID: PMC2805068.
6) Feng Ye, Guiqing Hu, Dianne Taylor, Boris Ratnikov, Mark A. McLean, Stephen G. Sligar, Kenneth A. Taylor, and Mark H. Ginsberg. Recreation of the terminal events in physiological integrin activation. J. Cell Biol. 188(1), 157-173 (2010). PMCID: PMC2812850.
7) Shenping Wu, Jun Liu, Mary C. Reedy, Richard T. Tregear, Hanspeter Winkler, Clara Franzini-Armstrong, Hiroyuki Sasaki, Carmen Lucaveche, Yale E. Goldman, Michael K. Reedy & Kenneth A. Taylor. Electron tomography of cryofixed, isometrically contracting insect flight muscle reveals novel actin-myosin interactions. PLoS ONE 5(9), e12643 (2010). PMCID: PMC2936580
8) Guiqing Hu, Jun Liu, Kenneth A Taylor & Kenneth H. Roux. Structural Comparison of HIV-1 Envelope Spikes with and without the V1/V2 loop. J. Virology, 85(6), 2741–2750 (2011). PMCID: PMC3067966
9) Agnieszka Collins, Anthony Warrington, Kenneth A. Taylor & Tatyana Svitkina. Structural organization of the actin cytoskeleton at the sites of clathrin-mediated endocytosis. Current Biology, 21(14), 1167-1175 (2011). PMCID: PMC3143238
10) Pradeep Luther, Hanspeter Winkler, Kenneth Taylor, Maria-Elena Zoghbi, Roger Craig, Raul Padron, John Squire and Jun Liu. Direct visualisation of the binding of myosin binding protein C to actin filaments in intact muscle. Proc. Natl. Acad. Sci. 108(28), 11423-11428 (2011) PMCID: PMC3136262
11) Bruce A. J. Baumann, Dianne W. Taylor, Florence Tama, Patty Fagnant, Kathy Trybus & Kenneth A. Taylor. Phosphorylated smooth muscle heavy meromyosin shows an open conformation linked to activation. J. Mol. Biol. 415(2), 274–287 (2012). PMCID: PMC3295741
12) Dustin McCraw, Jason O'Donnell, Scott Stagg, Kenneth A. Taylor & Michael S. Chapman. Structure of Adeno-Associated Virus-2 in complex with neutralizing monoclonal antibody A20. Virology 431(1,2), 40-49 (2012)
13) Shenping Wu, Jun Liu, Mary C. Reedy, R. J. Perz-Edwards, Richard T. Tregear, Hanspeter Winkler, Clara Franzini-Armstrong, Hiroyuki Sasaki, Carmen Lucaveche, Yale E. Goldman, Michael K. Reedy & Kenneth A. Taylor. Structural Changes in Isometrically Contracting Insect Flight Muscle Trapped Following a Mechanical Perturbation. PLoS-ONE 7(6): e39422. (2012)
14) Thomas F. Lerch, Jason K. O’Donnell, Nancy L. Meyer, Qing Xie, Kenneth A. Taylor, Scott M. Stagg & Michael S. Chapman. Structure of AAV-DJ, a retargeted gene therapy vector: cryo-electron microscopy at 4.5 Å resolution. Structure 20(8), 1310-1320 (2012)
15) Hanspeter Winkler & Kenneth A. Taylor. Marker-free dual-axis tilt series alignment. J. Struct. Biol. 182(2), 117-124 (2013)
16) H. Winkler, S. Wu and K. A. Taylor. Electron Tomography of Paracrystalline 2-D Arrays. In: Methods in Molecular Biology, Y. Cheng and I. Schmidt-Krey, Editors. Academic Press, San Diego, CA. vol. 955, pgs. 427-60 (2013)
17) Hanspeter Winkler, Kenneth A. Taylor. Marker-free dual-axis tilt series alignment J. Struct. Biol. 182(2), 117-124 (2013) PMCID: PMC4098971
18) Kenneth A. Taylor, Meikel Feig, Charles L. Brooks, III, Susan Lowey, Patricia M. Fagnant and Kathleen M. Trybus. Role of the essential light chain in the activation of smooth muscle myosin by regulatory light chain phosphorylation. J. Struct. Biol. 185, 375–382 (2014) PMCID: PMC4065857
19) G. Márquez, A. Pinto, L. Alamo, B. A. J. Baumann, F. Ye, H. Winkler, K. Taylor & R. Padrón. A method for 3D-reconstruction of a muscle thick filament using the tilt series images of a single filament electron tomogram. J. Struct. Biol. 186(2), 265-72 (2014). PMCID: PMC4102135
20) Moumita Dutta, Jun Liu, Kenneth H. Roux, and Kenneth A. Taylor. Visualization of retroviral envelope spikes 1 in complex with a variable loop antibody on intact viruses by cryo-electron tomography. J. Virology 88(21) 12265-75 (2014) PMCID: PMC4248906
21) Claudia Arakelian, Anthony Warrington, Hanspeter Winkler, R. J. Perz-Edwards, Michael K. Reedy, and Kenneth A. Taylor. Myosin cross-bridge origins indicate azimuthal rolling of motor domain during the weak to strong binding transition. Biophys J. 108, 1495–1502 (2015)
22) Aguang Dai, Feng Ye, Dianne W. Taylor, Guiqing Hu, Mark H. Ginsberg, Kenneth A. Taylor. The Structure of a Full-length Membrane-embedded Integrin Bound to a Physiological Ligand. J. Biol. Chem. 290, 27168-27175 (2015)
23) Zhongjun Hu, Dianne W. Taylor, Michael K. Reedy, Robert J. Perz-Edwards and Kenneth A. Taylor. Structure of myosin filaments from relaxed Lethocerus flight muscle by cryo-EM at 6 Å resolution. Sci. Adv. 2, e1600058 (2016)
Postdocoral Associates:Hu, Guiqing
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