bsc3402l\notebook.html

 

 

How to Keep a Laboratory Notebook

 

Record books are the property of the laboratory, where they form a "library of experiments" (just as an accountant's records belong to the corporation and should be intelligible to any other accountant). The system recommended here is a proven one, borrowed in part from that used in O. H. Lowry's laboratory. The general features of the system are described below.

 

1. Each record book has a unique number, which is issued chronologically.

2. When a notebook is filled, it is placed in the record library, which is located in the laboratory and accessible to all researchers.

3. The first pages of each book are reserved for a table of contents.

4. The right-hand pages are used to record protocol, solution preparation, and results-- that is, a log of laboratory activity.

5. The left-hand pages are for planning and interpretation. There it is appropriate to summarize a previous experiment (e.g., with a graph and a short statement), to outline the next experiment, to make a note of literature citations, to record calculations, etc.

6. Solution preparation should be recorded in a standardized manner, thus:

 

1 M Tris(base)

121g Tris(base)
118.6

S 91F-5002 qs 1000 ml H2O
979

 

The above notation indicates the nominal concentration in the left margin. The supplier (Sigma) and lot number (91F-5002) are also recorded. (There are often significant differences in purity and impact of contaminants among suppliers and lots.) It is calculated that a 1 M solution would contain 121.1 g of tris(base) per liter of solution. However, the researcher only weighs out approximately 121.1g; to weight out exactly 121.1 g is inefficient. The lower numbers record the precise quantity weighed out and the final volume, adjusted accordingly. The bottle is labelled with the solution and concentration and the book and page numbers of the records documenting the preparation. A solution or reagent derived from this stock would be recorded as shown on the following page.

 

100 mM Tris-Cl
(pH 8.1)

10 ml l M Tris(base) 57/173
+ 0.2 ml 12 N HCl Mall KJAL
qs 100 ml H2O
electrode pH = 7.9

 

"57/173" indicates the book and page number documenting preparation of the 1 M tris(base). Ingredients are added in order. The checks ( Ö ) are made as the ingredients are added.

 

Generally, solution concentrations are nominal. First, some reagents age (e.g., many enzymes lose activity during storage). Second, chemicals often are not supplied at absolute purity, and some inaccuracy accrues from imprecision in mass and volume measurements. Third, many solutions are required in small amounts and are expensive. For example, 100 ml of 10 mM (+)abscisic acid could be prepared accurately, but would cost more than US$100,000! On the other hand, the required amount, say 0.25 ml, is difficult to prepare. A compromise is to make the solution, not by diluting to a final volume, but the adding a certain volume of diluent, accounting in an approximate way for volume displacement by the solute, thus:

 

100 mM (+)ABA

6.6 mg (+)ABA Supplier, Lot number
+0.246 ml diluent

 

The total volume of this solution is approximately 0.25 ml, as 1 g ABA displaces about 0.6 ml of diluent.

 

In some cases, it is desirable to know precisely the concentration of reagent, even when the solution has necessarily been prepared imprecisely. Usually, the concentration is easy to measure. Thus, the original solution may be labelled 100 mM (+)ABA 57/175; after an accurate determination of the exact concentration ("standardized"), it is relabelled 97.4 mM (STD) (+)ABA 57/179.

 

7. Protocols should be written out in advance of their execution and some system must be used to ensure they are followed, especially when time is of the essence. There are two simple ways to establish fidelity. The method required in this course is to place a check by each task as it is accomplished. A statement such as "expt like pg 10" wholly inadequate. A second method is to accumulate "waste" (e.g., after a pipette is used, it can be set aside, in sequence, at the edge of the work area). A typical protocol can be recorded as shown on the following page.

13 Jan 1997

 

Expt.: A340/ time, + PGA, + extract (= PGal DH) 

t0

To Tubes 1-4, + 3 ml Assay Cocktail 57/128

t4 (at 0.3 minute intervals)

To Tubes 1,2, + 30 µl extract-1 57/128
To Tubes 3,4, + 30 µl extract-2 57/128

 

A340 of Tubes

1

2

3

4

t6 (at 0.3 minute intervals)

0.77

0.78

0.77

0.79

t8

0.77

0.77

0.77

0.78

t10

0.76

0.77

0.76

0.78

t12 (at 0.3 minute intervals) To Tubes 1,3, + 30 µl 200 mM PGA 57/114

 

A340 of Tubes

1

2

3

4

t14 (at 0.3 minute intervals)

0.74

0.77

0.75

0.78

t16

0.72

0.77

0.73

0.78

..... (etc.)

       

 

Even now, your experiment is NOT over! Analyze your data. Plot it. Discuss your interpretation with the TA. Plan your next experiment. Discuss your plan with the TA. Write out your protocol for the next experiment. Discuss it with the TA. Remember that no observation is reliable until it has been repeated.