TOOLS

Non exhaustive list of tools we often use:

Primer design
Oligo calculator: http://www.basic.nwu.edu/biotools/oligocalc.html

DNA sequence alignment
BIOEDIT:http://www.mbio.ncsu.edu/BioEdit/bioedit.html
SE-AL: http://evolve.zoo.ox.ac.uk/

Phylogenetics and DNA sequence analysis
MESQUITE: http://mesquiteproject.org/mesquite/mesquite.html
PAUP*: http://paup.csit.fsu.edu/versions.html
PHYLIP: http://evolution.genetics.washington.edu/phylip.html
MACCLADE: http://phylogeny.arizona.edu/macclade/macclade.html
MODELTEST: http://inbio.byu.edu/Faculty/kac/crandall_lab/modeltest.htm
PLATO: http://evolve.zoo.ox.ac.uk/

Others
TREEVIEW: http://taxonomy.zoology.gla.ac.uk/rod/treeview.html
ODSN Plate Tectonic: http://www.odsn.de/odsn/services/paleomap/paleomap.html




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