TOOLS
Non exhaustive list of tools we often use:
Primer design
Oligo calculator:
http://www.basic.nwu.edu/biotools/oligocalc.html
DNA sequence alignment
BIOEDIT:
http://www.mbio.ncsu.edu/BioEdit/bioedit.html
SE-AL:
http://evolve.zoo.ox.ac.uk/
Phylogenetics and DNA sequence analysis
MESQUITE:
http://mesquiteproject.org/mesquite/mesquite.html
PAUP*:
http://paup.csit.fsu.edu/versions.html
PHYLIP:
http://evolution.genetics.washington.edu/phylip.html
MACCLADE:
http://phylogeny.arizona.edu/macclade/macclade.html
MODELTEST:
http://inbio.byu.edu/Faculty/kac/crandall_lab/modeltest.htm
PLATO:
http://evolve.zoo.ox.ac.uk/
Others
TREEVIEW:
http://taxonomy.zoology.gla.ac.uk/rod/treeview.html
ODSN Plate Tectonic:
http://www.odsn.de/odsn/services/paleomap/paleomap.html
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Copyright
© 2002, Iowa State University, all rights reserved.
Please direct comments to
ofedrigo@iastate.edu
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