Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
99742 |
99742 |
| Not Truncated |
92512 |
92628 |
| Truncated |
7230 |
7114 |
| Too short to map |
2658 |
2476 |
| Average length of truncated sequence |
22.45 |
22.63 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
70709 |
69694 |
| Multiple Alignments |
18350 |
18333 |
| Failed To Align |
8025 |
9239 |
| Paired |
52045 |
52045 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
26511 |
| Invalid Pairs |
25534 |
| Same Circularised |
431 |
| Same Fragment Dangling Ends |
2233 |
| Same Fragment Internal |
12444 |
| Re-ligation |
972 |
| Contiguous Sequence |
61 |
| Wrong Size |
9393 |
| Total Pairs |
52045 |
Di-tag length Distribution
De-duplication
Percentage uniques: 100.0
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
26511 |
26508 |
| Cis-close (< 10Kbp) |
1209 |
1209 |
| Cis-far (> 10Kbp) |
13273 |
13272 |
| Trans |
12029 |
12027 |
