| Gene | Gene Full Name | B73v2 GRMZM | GenBank ID | Chromosome | Local duplicates | Subgenome | Gene Comments, JS | Sorghum Ortholog | Rice Ortholog |
| a1 | anthocyaninless1 | GRMZM2G026930 | X05068 | chr3 | 1 | Good | Sb03g028890 | Os01g44260 | |
| a2 | anthocyaninless2 | GRMZM2G345717 | X55314 | chr5 | 1 | Good | Sb04g000260 | chr2:0-600403 | |
| a4 | anthocyaninless4 | GRMZM2G013726 | Y16040 | chr8 | 2 | Good|inverted repeats surround gene | Sb03g028890 | Os01g44260 | |
| abp1 | auxin binding protein1 | GRMZM2G116204 | L08425 | chr3 | 2 | Good | Sb08g016760 | too big a gap | |
| abp4 | auxin binding protein homolog4 | GRMZM2G064371 | L08426 | chr10 | GRMZM2G078508 | 1 | Good | Sb08g016760 | Os12g34450 |
| abph1 | aberrant phyllotaxy1 | GRMZM2G035688 | AB042260 | chr2 | 1 | Good | Sb06g022960 | Os04g44280 | |
| acc1 | acetyl-coenzyme A carboxylase1 | GRMZM5G858094 | Z24449 | chr2 | NA | Good | no synteny | no synteny | |
| act1 | actin1 | GRMZM2G126010 | J01238 | chr8 | GRMZM2G126069 | 2 | Good | Sb09g021660 | Os05g36290 |
| add1 | alternative discordia1 | GRMZM2G120178-GRMZM2G050800 | FJ469779 | 2 | Gene split by maizesequence.org|exons completely lost | Sb09g003830 | Os05g05710 | ||
| adf1 | actin depolymerizing factor1 | GRMZM2G117603 | X80820 | chr7 | 1 | Good | Sb02g033380 | Os07g30090 | |
| adh1 | alcohol dehydrogenase1 | GRMZM2G442658 | X00580 | chr1 | 1 | Good | Sb01g008730 | chr3:30154185-30678637 | |
| adh2 | alcohol dehydrogenase2 | GRMZM2G098346 | X02915 | chr4 | 1 | Good | Sb05g009360 | Os11g10480 | |
| ae1 | amylose extender1 | GRMZM2G032628 | L08065 | chr5 | 1 | Good | Sb04g021540 | Os02g32660 | |
| afd1 | absence of first division1 | GRMZM2G059037 | AY788900 | chr6 | 1 | Good | Sb09g029640 | Os05g50410 | |
| ahh1 | adenosyl homocysteine hydrolase1 | GRMZM2G015295 | AW424691 | chr4 | GRMZM2G494688 | 1 | Can't proof | too big a gap | Os11g26850 |
| akh1 | aspartate kinase-homoserine dehydrogenase1 | GRMZM2G365423-GRMZM2G389303-GRMZM2G437977 | L33912 | chr4 | 2 | Gene split by maizesequence.org three genes | too big a gap | no synteny | |
| akh2 | aspartate kinase homoserine dehydrogenase2 | GRMZM2G104546 | L33913 | chr2 | 2 | Good | Sb02g019450 | no synteny | |
| ald1 | aldolase1 | GRMZM2G057823 | X12872 | chr3 | 1 | Good | Sb03g043140 | Os01g67860 | |
| am1 | ameiotic1 | GRMZM5G883855 | DQ663482 | chr5 | 2 | Good | Sb01g013215 | Os03g44760 | |
| amya3 | alpha amylase3 | GRMZM2G138468 | L25805 | chr2 | GRMZM2G566151 | 2 | Good | Sb02g026610 | Os09g28400 |
| amyb5 | beta amylase5 | GRMZM2G058310 | Z25871 | chr7 | GRMZM2G358467 | 1 | Good | Sb02g035600 | Os07g35940 |
| an1 | anther ear1 | GRMZM2G081554 | L37750 | chr1 | 1 | Good | Sb01g021990 | chr10:13517249-14258420 | |
| ane1 | androgenic embryo1 | GRMZM2G039942 | AJ011559 | chr4 | NA | Good | no synteny | no synteny | |
| ane3 | androgenic embryo3 | GRMZM2G372553 | AJ307880 | chr10 | 1 | Can't proof | Sb07g003415 | chr8:2932877-3054776 | |
| ant2 | adenine nucleotide translocator2 | GRMZM2G135186 | X15712 | chr4 | 2 | Good | Sb04g029750 | Os02g48720 | |
| apt1 | aberrant pollen transmission1 | GRMZM2G448687 | DQ020097 | chr9 | 2 | Good | Sb01g035230 | Os03g23030 | |
| arpp1a | acidic ribosomal protein P1a | GRMZM2G032315 | U62752 | chr6 | 1 | Good | Sb07g001570 | Os08g02340 | |
| arpp2a | acidic ribosomal protein P2a | GRMZM2G119809 | X86553 | chr8 | GRMZM2G102891||GRMZM2G105712 | 2 | Good | Sb09g029390 | chr5:28584191-29087363 |
| atp1 | ATPase1 | GRMZM2G101020 | M95063 | chr3 | 2 | Good | Sb08g004390 | Os12g07140 | |
| b1 | colored plant1 | GRMZM2G172795 | X57276 | chr2 | 1 | Missing internal exon (gene model and pseudomolecule) | Sb06g025060 | Os04g47059 | |
| ba1 | barren stalk1 | GRMZM2G397518 | AY753892 | chr3 | 1 | Good | Sb03g038820 | Os01g61480 | |
| bap2 | basal layer antifungal protein2 | GRMZM2G152655 | AJ133529 | chr4 | GRMZM2G027472 | 2 | Good | Sb07g003420 | too big a gap |
| bd1 | branched silkless1 | GRMZM2G307119 | AY196003 | chr7 | 1 | Good | Sb02g042400 | Os07g47330 | |
| bde1 | bearded-ear1 | GRMZM2G160565 | L46397 | chr5 | 1 | Good | Sb04g031750 | Os02g45770 | |
| betl3 | basal endosperm transfer layer3 | GRMZM2G175976 | AJ133530 | chr3 | 2 | Good | too big a gap | no synteny | |
| bif2 | barren inflorescence2 | GRMZM2G171822 | EF532402 | chr1 | 1 | deletion within first exon | Sb08g021520 | Os12g42050 | |
| bip1 | Binding protein homolog1 | GRMZM2G114793 | U58208 | chr5 | 1 | Good | Sb04g001140 | Os02g02410 | |
| bm1 | brown midrib1 | GRMZM5G844562 | AJ005702 | chr5 | GRMZM5G868202 | 1 | Good | Sb04g005950 | Os02g09490 |
| bm3 | brown midrib3 | AC196475.3_FG004 | M73235 | chr4 | 2 | Good | Sb07g003860 | Os08g06100 | |
| brk1 | brick1 | GRMZM5G842058 | AY093614 | chr5 | 1 | Good | Sb04g038300 | Os02g58320 | |
| bsd2 | bundle sheath defective2 | GRMZM2G062788 | AF126742 | chr1 | 1 | Good | chr8:49843172-50129204 | chr12:23768068-24054915 | |
| bt1 | brittle endosperm1 | GRMZM2G144081 | M79333 | chr5 | 1 | Good | Sb04g007010 | no synteny | |
| bt2 | brittle endosperm2 | GRMZM2G068506 | AF544167 | chr4 | 2 | Good|potentially missing upstream exons | too big a gap | no synteny | |
| bx1 | benzoxazinless1 | GRMZM2G085381 | X76713 | chr4 | 1 | Good | chr5:58868109-59571565 | chr11:25708564-25959495 | |
| bx2 | benzoxazinone synthesis2 | GRMZM2G085661 | X81831 | chr4 | 1 | Good | Sb05g026080 | Os11g41710 | |
| bx3 | benzoxazinone synthesis3 | GRMZM2G167549 | X81829 | chr4 | GRMZM2G172491||GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 | 1 | Good | Sb05g026065 | chr11:25708564-25959495 |
| bx4 | benzoxazinone synthesis4 | GRMZM2G172491 | X81827 | chr4 | GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 | 1 | Good | Sb05g026065 | chr11:25708564-25959495 |
| bx5 | benzoxazinone synthesis5 | GRMZM2G063756 | X81830 | chr4 | GRMZM2G167549||GRMZM2G172491||GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 | 1 | Good | Sb05g026080 | chr11:25708564-25959495 |
| bz1 | defective kernel1 | GRMZM2G165390 | X07937 | chr9 | 1 | Good | Sb10g006140 | Os06g09240 | |
| bz2 | bronze2 | GRMZM2G016241 | U14599 | chr1 | 1 | Good | Sb01g022080 | chr10:13445230-14195619 | |
| c1 | colored aleurone1 | GRMZM2G005066 | X52201 | chr9 | 1 | Missing 3' UTR in maizesequence.org | Sb10g006700 | Os06g10350 | |
| c2 | colorless2 | GRMZM2G422750 | X60205 | chr4 | 1 | Good | Sb05g020150 | Os11g32650 | |
| caf2 | crs2 associated factor2 | AC199526.5_FG003 | AY264369 | chr3 | 1 | Good | Sb03g013160 | Os01g21990 | |
| cal1 | calmodulin1 | GRMZM2G117582 | X74490 | chr6 | 1 | Good | Sb09g024030 | Os05g41270 | |
| cal2 | calmodulin2 | GRMZM2G067511 | X77397 | chr3 | 1 | Good | chr3:10895034-11088655 | Os01g16240 | |
| cal3 | calmodulin3 | GRMZM2G152891 | X77396 | chr1 | GRMZM2G452760 | 1 | Good | Sb01g037010 | Os03g20370 |
| cap1 | calcium pump1 | GRMZM2G056014 | AF096871 | chr8 | 2 | Good | Sb09g001850 | Os05g02940 | |
| cat1 | catalase1 | GRMZM2G088212 | X60135 | chr5 | 1 | Good | Sb10g030840 | Os06g51150 | |
| cat2 | catalase2 | GRMZM2G090568 | X54819 | chr1 | 1 | Good | Sb01g048280 | Os03g03910 | |
| cat3 | catalase3 | GRMZM2G079348 | L05934 | chr4 | 2 | Good | Sb04g001130 | Os02g02400 | |
| ccp1 | cysteine protease1 | GRMZM2G098298 | D45402 | chr5 | 1 | Good | too big a gap | too big a gap | |
| ccp2 | cysteine protease2 | GRMZM2G038636 | X99936 | chr7 | 1 | Good | Sb02g025920 | Os09g27030 | |
| cdj2 | chaperone DNA J2 | GRMZM2G364069 | AF053468 | chr1 | 1 | Good | Sb01g013390 | Os03g44620 | |
| cesa1 | cellulose synthase1 | GRMZM2G112336 | AF200525 | chr8 | 2 | Good | Sb09g005280 | too big a gap | |
| cesa2 | cellulose synthase2 | GRMZM2G027723 | AF200526 | chr6 | 1 | Good | Sb09g005280 | Os05g08370 | |
| cesa3 | cellulose synthase3 | GRMZM2G039454 | AF200527 | chr3 | 1 | Good | Sb03g004310 | chr1:3437238-3858481 | |
| cesa5 | cellulose synthase5 | GRMZM2G111642 | AF200529 | chr1 | GRMZM2G111837 | 1 | Good | Sb01g004210 | Os03g59340 |
| cesa6 | cellulose synthase6 | GRMZM2G113137 | AF200530 | chr1 | 1 | Good | Sb01g002050 | Os03g62090 | |
| cesa7 | cellulose synthase7 | GRMZM2G025231 | AF200531 | chr7 | 1 | Good | Sb02g010110 | Os07g24190 | |
| cesa8 | cellulose synthase8 | GRMZM2G177631 | AF200532 | chr7 | 1 | Good | Sb02g007810 | too big a gap | |
| cesa9 | cellulose synthase9 | GRMZM2G018241 | AF200533 | chr2 | GRMZM2G150404||GRMZM2G319836||GRMZM2G452739 | 2 | partial identical duplicate:GRMZM2G150404 |assembly errors? | Sb02g006290 | Os07g10770 |
| cf1 | camouflage1 | GRMZM2G026117 | BT042702 | chr5 | 1 | Good | Sb04g004630 | Os02g07230 | |
| chi1 | chalcone flavanone isomerase1 | GRMZM2G155329 | Z22760 | chr1 | 1 | Good | Sb01g003330 | Os03g60509 | |
| chn2 | chitinase2 | GRMZM2G145461 | L00973 | GRMZM2G145518||GRMZM2G447967 | 2 | Good | chr10:59525238-60462013 | Os06g51050 | |
| chn3 | chitinase3 | GRMZM2G389582 | L16798 | chr5 | GRMZM2G064360 | 1 | Good | chr10:60362013-60952691 | Os06g51050 |
| cip1 | cytokinin inducible protease1 | GRMZM2G009443 | T14785 | chr10 | 1 | Can't proof | chr8:15672577-16127244 | no synteny | |
| cka1 | CK2 protein kinase alpha 1 | GRMZM2G143602 | X61387 | chr2 | 2 | Good | Sb02g001110 | Os07g02350 | |
| cka2 | CK2 protein kinase alpha 2 | GRMZM2G047855 | Y11526 | chr1 | 1 | Good | Sb01g007270 | Os03g55389 | |
| cko1 | cytokinin oxidase1 | GRMZM2G146644 | Y18377 | chr3 | 1 | wrong exons in middle of transcript-real ones missing | Sb03g003300 | Os01g09246 | |
| conz1 | constans1 | GRMZM2G405368 | EU098139 | chr9 | GRMZM2G545607 | 1 | Good | Sb10g010050 | Os06g16370 |
| cpn1 | chaperonin 1 | GRMZM2G458208-GRMZM2G111477 | L21007 | chr5 | 2 | Gene split by maizesequence.org | Sb01g020010 | Os10g32550 | |
| cr4 | crinkly4 | GRMZM2G051637 | U67422 | chr10 | 1 | Good | Sb08g003290 | chr12:2558011-3036894 | |
| crp1 | chloroplast RNA processing1 | GRMZM2G083950 | AF073522 | chr7 | 1 | Good | Sb02g035800 | Os07g36390 | |
| crr2 | cytokinin response regulator2 | GRMZM2G392101 | AB031012 | chr10 | 2 | Good | Sb06g032600 | Os04g57720 | |
| crs1 | chloroplast RNA splicing1 | GRMZM2G078412 | AY109620 | chr1 | 1 | Good | no synteny | Os08g27150 | |
| crs2 | chloroplast RNA splicing2 | GRMZM2G132021 | AF225708 | chr8 | 2 | Good | Sb03g007130 | Os01g04130 | |
| crt2 | calreticulin2 | GRMZM2G358059 | X89813 | chr7 | 1 | Good | Sb02g007480 | Os07g14270 | |
| csy1 | chloroplast SecY-1 | GRMZM5G809546 | AF039304 | chr10 | NA | Good | no synteny | no synteny | |
| cta1 | chitinase A1 | GRMZM2G051943 | M84164 | chr2 | GRMZM2G051921||GRMZM2G052175||GRMZM2G122708 | 1 | Good | Sb06g021230 | Os04g41680 |
| cyc1 | cyclin1 | GRMZM2G034647 | U10078 | chr8 | GRMZM5G804421 | 2 | Good | Sb09g024180 | Os05g41390 |
| cyc2 | cyclin2 | chr3:41183262 | U10077 | chr3 | No gene model | ||||
| cyc3 | cyclin3 | GRMZM2G073671 | U10076 | chr6 | 2 | Good | Sb10g030790 | Os06g51110 | |
| cyc4b | cyclin4 | GRMZM2G310115 | U10079 | chr8 | 2 | Good | Sb03g037470 | Os01g59130 | |
| cyp1 | cytochrome P450 homolog1 | GRMZM5G899349 | T12664 | chr3 | 2 | Can't proof | Sb08g002250 | no synteny | |
| cyp8 | cytochrome P-450 8 | GRMZM2G167986 | L23209 | chr1 | GRMZM5G825885 | 1 | Good | Sb01g022690 | Os10g26340 |
| d3 | dwarf plant3 | GRMZM2G093195 | U32579 | chr9 | 1 | Good | Sb10g000920 | Os06g02019 | |
| d8 | dwarf plant8 | GRMZM2G144744 | AY103865 | chr1 | 1 | Good | Sb01g010660 | Os03g49990 | |
| d9 | dwarf plant9 | GRMZM2G024973 | DQ903073 | chr5 | 2 | Good | Sb01g010660 | Os03g49990 | |
| dbf3 | DRE-binding protein3 | GRMZM2G124037 | AY964718 | GRMZM2G124011 | 2 | Good | Sb02g030320 | Os09g35020 | |
| dcd1 | discordia1 | GRMZM2G083459 | FJ469780 | chr10 | 1 | Good | Sb09g003830 | Os05g05710 | |
| dek1 | defective kernel1 | GRMZM2G321753 | AY061806 | chr1 | 1 | Good | Sb01g037910 | chr3:10491680-10834228 | |
| dgat1 | diacyglycerol acyltransferase1 | GRMZM2G169089 | EU039830 | chr6 | 2 | Good | Sb10g022270 | too big a gap | |
| dhn1 | dehydrin1 | GRMZM2G079440 | X15290 | chr6 | 1 | Good | Sb09g018420 | chr5:17019836-17955366 | |
| dlf1 | delayed flowering1 | GRMZM2G067921 | EF093789 | chr7 | GRMZM5G858064 | NA | Good | no synteny | Os09g36910 |
| dmt101 | DNA methyl transferase1 | GRMZM2G333916 | AF229183 | chr7 | 1 | Good | Sb02g004680 | Os07g08500 | |
| dof2 | DNA binding with one finger2 | GRMZM2G009406 | X79934 | chr2 | 2 | Good | Sb02g027480 | Os09g29960 | |
| dsc1 | discolored kernel1 | chr4:47715993 | AF006498 | chr4 | Not gene model | ||||
| du1 | dull endosperm1 | GRMZM2G141399 | AF023159 | chr10 | 1 | Good | Sb07g005400 | Os08g09230 | |
| dwf1 | DWF1 like1 | GRMZM2G057000 | AY523572 | chr5 | GRMZM2G358007 | 1 | Good | Sb10g031090 | no synteny |
| dzs18 | delta zein structural18 | GRMZM2G100018 | U31541 | chr6 | 2 | Good | Sb10g013050 | no synteny | |
| ea1 | egg apparatus1 | GRMZM2G456746 | AY733074 | chr7 | 1 | Good | Sb02g038820 | Os07g41400 | |
| eif5 | eucaryotic translation initiation factor5 | GRMZM2G165917 | X99517 | chr4 | GRMZM5G899228 | 2 | Good | Sb04g003550 | too big a gap |
| eif5a | elongation initiation factor5A | GRMZM2G113696 | H35879 | chr2 | 2 | Can't proof | Sb02g038290 | Os07g40580 | |
| elfa1 | elongation factor alpha1 | AC233866.1_FG006 | M95072 | chr6 | GRMZM5G859846||GRMZM5G896006 | 1 | Can't proof | too big a gap | chr5:16888752-17955366 |
| elfg1 | elongation factor gamma1 | GRMZM2G122871 | T14690 | chr6 | 2 | Can't proof | Sb10g022570 | too big a gap | |
| elm1 | elongated mesocotyl1 | GRMZM5G861678 | AY560384 | chr8 | 2 | Good | Sb03g045760 | Os01g72090 | |
| emp2 | empty pericarp 2 | GRMZM2G039155 | AF494285 | chr2 | 2 | Good | Sb02g023500 | Os09g20830 | |
| emp4 | empty pericarp4 | GRMZM2G092198 | DQ291135 | chr1 | 1 | Good | Sb01g009420 | Os03g51840 | |
| eno1 | enolase1 | GRMZM2G064302 | X55981 | chr9 | 1 | Good | Sb10g002460 | Os06g04510 | |
| et1 | etched1 | GRMZM2G157574 | AJ507104 | chr3 | GRMZM5G887575 | 1 | Good | Sb03g027210 | Os01g42050 |
| expa1 | alpha expansin1 | GRMZM2G339122 | AY104146 | chr3 | 1 | Good | Sb03g038290 | Os01g60770 | |
| fdx3 | ferredoxin3 | GRMZM2G053458 | AB001387 | chr1 | 1 | Good | Sb01g002180 | Os03g61960 | |
| fea2 | fasciated ear2 | GRMZM2G104925 | AY055124 | chr4 | 2 | Good | Sb04g025240 | Os02g39100 | |
| fer1 | ferritin1 | GRMZM2G325575 | X61391 | chr4 | 1 | Good | Sb05g000530 | Os11g01530 | |
| fer2 | ferritin homolog2 | GRMZM2G147266 | X61392 | GRMZM2G066165||GRMZM5G854762 | 1 | CDS wrong|real gene is annotated as only 3' UTR | too big a gap | no synteny | |
| fgs1 | ferredoxin-dependent glutamate synthase1 | GRMZM2G036609 | M59190 | chr7 | 1 | Good | Sb02g041740 | Os07g46460 | |
| fht1 | flavanone 3-hydroxylase1 | GRMZM2G062396 | U04434 | chr2 | 1 | Good | Sb06g031790 | Os04g56700 | |
| fie1 | fertilization independent endosperm1 | GRMZM2G118205 | AY061964 | chr4 | 2 | Good | Sb07g002820 | Os08g04290 | |
| fie2 | fertilization independent endosperm2 | GRMZM2G148924 | AY061965 | chr10 | 1 | Good | Sb07g002820 | Os08g04290 | |
| fl2 | floury2 | GRMZM2G397687 | L34340 | chr4 | GRMZM2G397678 | 1 | Good | too big a gap | too big a gap |
| fps1 | farnesyl pyrophosphate synthase1 | GRMZM2G168681 | AF330036 | chr8 | 2 | Good | Sb09g027190 | Os05g46580 | |
| g2 | golden plant2 | GRMZM2G087804 | AF298118 | chr3 | GRMZM2G087961 | 1 | Good | Sb03g000400 | Os01g13740 |
| gdh1 | glutamic dehydrogenase1 | GRMZM2G178415 | AY106054 | chr1 | 1 | Good | Sb01g005370 | Os03g58040 | |
| gl1 | glossy1 | GRMZM2G114642 | U37428 | chr7 | 1 | Good | Sb02g025220 | Os09g25850 | |
| gl15 | glossy15 | GRMZM2G160730 | U41466 | chr9 | 1 | Good|neither transcript completely accurate | Sb10g025053 | Os06g43220 | |
| gl2 | glossy2 | GRMZM2G098239 | AY109951 | chr2 | GRMZM5G867147 | 1 | Good | Sb06g028160 | Os04g52164 |
| gl8 | glossy8 | AC205703.4_FG006 | U89509 | chr5 | 1 | Good | Sb04g025020 | Os02g38440 | |
| glb1 | globulin1 | GRMZM2G067919 | U28017 | chr1 | 1 | Good | Sb01g012640 | Os03g46100 | |
| glb2 | globulin2 | GRMZM2G026703 | X53715 | chr1 | 1 | Good | Sb01g005440 | Os03g57960 | |
| gln1 | glutamine synthetase1 | GRMZM2G098290 | X65931 | chr10 | 2 | Good | Sb06g031460 | Os04g56400 | |
| gln2 | glutamine synthetase2 | GRMZM2G024104 | X65927 | chr1 | 1 | Good | Sb01g010270 | Os03g50490 | |
| gln3 | glutamine synthetase3 | GRMZM2G046601 | X65930 | chr9 | GRMZM5G887009 | 2 | Good | Sb01g042450 | Os03g12290 |
| gln4 | glutamine synthetase4 | GRMZM5G872068 | X65928 | chr5 | 1 | Good | Sb04g028690 | Os02g50240 | |
| gln5 | glutamine synthetase5 | GRMZM2G036464 | X65929 | chr4 | 2 | Good | Sb04g028690 | Os02g50240 | |
| gln6 | glutamine synthetase6 | GRMZM2G050514 | X65926 | chr1 | 1 | Good | Sb01g042450 | Os03g12290 | |
| glu1 | beta glucosidase1 | GRMZM2G016890 | U33816 | chr10 | GRMZM2G014844||GRMZM2G119460 | 1 | Good | Sb08g007586 | no synteny |
| glu2 | beta-glucosidase2 | GRMZM2G008247 | U44087 | chr10 | 1 | Good | no synteny | chr12:7256295-7525701 | |
| gn1 | gnarley1 | GRMZM2G452178 | AY312168 | chr2 | 2 | Good | Sb02g002200 | Os03g56110 | |
| gol1 | goliath1 | GRMZM2G080079 | T18797.1 | chr4 | 2 | Can't proof | Sb04g028130 | Os02g50990 | |
| got2 | glutamate-oxaloacetate transaminase2 | GRMZM5G836910 | AY105250 | chr5 | 1 | Good | Sb04g036060 | Os02g55420 | |
| gpa1 | glyceraldehyde-3-phosphate dehydrogenase1 | GRMZM2G337113 | X07157 | chr2 | GRMZM2G337196 | 1 | Good | Sb06g018880 | Os04g38600 |
| gpc1 | glyceraldehyde-3-phosphate dehydrogenase1 | GRMZM2G046804 | X15596 | chr4 | 2 | Good | Sb07g002220 | Os08g03290 | |
| gpc2 | glyceraldehyde-3-phosphate dehydrogenase2 | GRMZM2G180625 | U45858 | chr6 | 1 | Good | Sb07g002220 | Os08g03290 | |
| gpc3 | glyceraldehyde-3-phosphate dehydrogenase3 | GRMZM2G071630 | L13431 | chr4 | GRMZM2G072119 | 2 | Good | Sb04g025120 | Os02g38920 |
| grf1 | general regulatory factor1 | GRMZM2G102499 | AY110485 | chr2 | 1 | Good | Sb06g019100 | Os04g38870 | |
| grp1 | glycine-rich protein1 | GRMZM2G080603 | X61121 | chr1 | GRMZM5G836166 | 1 | Good | too big a gap | no synteny |
| grp3 | glycine-rich protein3 | GRMZM2G154954 | Y07781 | chr5 | 2 | Good | too big a gap | too big a gap | |
| gsr1 | glutathione reductase1 | GRMZM2G172322 | T12723 | chr1 | 1 | Good | Sb01g046260 | Os03g06740 | |
| gst1 | glutathione-S-transferase1 | GRMZM2G116273 | X06754 | chr8 | 2 | Good | Sb03g035420 | Os01g55830 | |
| gst4 | glutathione S-transferase4 | GRMZM2G146246 | W49853 | chr3 | GRMZM5G849767 | 1 | Good | Sb03g044980 | Os01g70770 |
| gzr1 | gamma zein modifier1 | GRMZM2G138727 | S78780 | chr7 | GRMZM2G438538 | 1 | Good|identical to 27-kDa zein protein | Sb02g025510 | chr9:15882395-16462627 |
| hcf106 | high chlorophyll fluorescence106 | GRMZM5G898735 | AF027808 | chr2 | 1 | Good | Sb06g014410 | chr4:19032798-19318750 | |
| hcf106c | high chlorophyll fluorescence106c | GRMZM2G151529 | AF237945 | chr10 | GRMZM2G002911||GRMZM2G151566||GRMZM2G484851 | 2 | Good | Sb06g014410 | chr4:19177617-19798474 |
| hda108 | histone deacetylase | GRMZM2G136067 | AF440226 | chr4 | 2 | Good | too big a gap | no synteny | |
| hir1 | hypersensitive induced reaction1 | GRMZM2G117755 | AF236373 | chr4 | 2 | Good | Sb07g019760 | Os08g30790 | |
| his2a1 | histone2A1 | GRMZM2G305046 | U08225 | chr9 | GRMZM2G305035 | 2 | Good | Sb01g039240 | Os03g17100 |
| his2b1 | histone2b1 | GRMZM2G071959 | X57312 | chr7 | 1 | Good | Sb02g025410 | chr9:15818244-16396427 | |
| his2b2 | histone2b2 | GRMZM2G119071 | X57313 | chr4 | GRMZM2G553422 | 2 | Good | Sb07g022370 | chr8:22231845-22466035 |
| hm1 | Helminthosporium carbonum susceptibility1 | GRMZM5G881887 | L02540 | chr1 | 1 | Good | Sb07g023130 | too big a gap | |
| hm2 | Helminthosporium carbonum susceptibility2 | GRMZM2G086773 | AF041047 | chr9 | 1 | Good | Sb10g025770 | Os06g44180 | |
| hmg1 | high mobility group protein1 | GRMZM5G834758 | X66077 | chr5 | 1 | Good | Sb10g030910 | Os06g51220 | |
| hopi1 | hopi r1/b1 family member1 | GRMZM5G822829 | AJ251719 | chr10 | 2 | Good|lc1 | Sb06g025060 | Os04g47059 | |
| hrg1 | hydroxyproline rich glycoprotein1 | GRMZM2G168651 | X63134 | chr2 | 1 | Good | Sb06g016310 | Os04g34170 | |
| hsbp1 | herbicide safener binding protein1 | GRMZM2G085924 | AF033496 | chr2 | GRMZM2G385313||GRMZM2G506270 | Good | no synteny | no synteny | |
| hsk1 | high-sulfur keratin homolog1 | GRMZM5G844723 | T14673 | chr9 | 2 | Can't proof | chr1:58795354-59707921 | chr3:12522642-13228664 | |
| hsp1 | heat shock protein1 | GRMZM2G310431 | X03697 | chr8 | 2 | Good | Sb03g039360 | Os01g62290 | |
| hsp101 | heat-shock protein 101 | GRMZM2G360681 | AF077337 | chr6 | 1 | Good | Sb09g025900 | Os05g44340 | |
| hsp18c | heat shock protein18c | GRMZM2G034157 | X54075 | chr8 | 2 | Upstream UTR missing | too big a gap | too big a gap | |
| hsp18f | heat shock protein18f | GRMZM2G083810 | X54076 | chr3 | 1 | Good | Sb03g003530 | Os01g08860 | |
| hsp70-4 | heat shock protein70-4 | GRMZM2G340251 | X78414 | chr3 | GRMZM5G817178 | 2 | Good | Sb08g018750 | Os12g38180 |
| hyp1 | hybrid proline-rich protein1 | GRMZM2G304378 | X60432 | chr9 | GRMZM2G304385 | 1 | Good | Sb10g004790 | Os06g07220 |
| ibp2 | initiator-binding protein2 | GRMZM2G110309 | X79086 | chr1 | 1 | Good | Sb01g039650 | Os03g16700 | |
| id1 | indeterminate growth1 | GRMZM2G011357 | AF058757 | chr1 | 1 | Good | Sb01g021480 | Os10g28330 | |
| ig1 | indeterminate gametophyte1 | GRMZM2G118250 | EF081454 | chr3 | GRMZM2G419929 | 1 | Good | Sb03g042310 | Os01g66590 |
| igl1 | indole-3-glycerol phosphate lyase1 | GRMZM2G046191 | NM_001111532 | chr1 | 1 | Assignment corrected by maizesequence.org | |||
| ij1 | iojap striping1 | GRMZM2G004583 | Z15063 | chr7 | 1 | Good | Sb02g028720 | Os09g32030 | |
| im30p1 | IM30 protein homolog1 | GRMZM2G017077 | T12745 | chr3 | 1 | Can't proof | Sb03g042550 | Os01g67000 | |
| in1 | intensifier1 | GRMZM2G042733 | U57899 | chr7 | 1 | Good | Sb02g006390 | Os07g11020 | |
| incw1 | cell wall invertase1 | GRMZM2G139300 | U17695 | chr5 | 1 | Good | Sb04g021810 | Os02g33110 | |
| incw3 | invertase cell wall3 | GRMZM2G123633 | AF043346 | chr10 | GRMZM2G095725 | 2 | Good | too big a gap | Os04g33740 |
| isr1 | inhibitor of striate1 | GRMZM5G803874 | AF296824 | chr10 | 2 | Good | Sb06g025010 | Os04g47020 | |
| ivr1 | invertase1 | GRMZM2G394450 | U16123 | chr2 | 1 | Good | Sb06g023760 | Os04g45290 | |
| ivr2 | invertase2 | GRMZM2G089836 | AJ563384 | chr5 | GRMZM5G863665||GRMZM5G890000 | 1 | Good | Sb04g000620 | Os02g01590 |
| kan1 | KANADI1 | GRMZM2G056400 | EU935003 | chr1 | 1 | Good | Sb07g020820 | Os08g33050 | |
| kan3 | kanadi3 | GRMZM2G175827 | EU925399 | chr4 | 2 | Good | Sb07g020820 | Os08g33050 | |
| kch2 | potassium channel2 | AC234152.1_FG007-AC234152.1_FG002 | AJ132686 | chr8 | 2 | Gene split by maizesequence.org | Sb09g021210 | chr5:20322584-21033855 | |
| kch3 | potassium channel3 | GRMZM2G081666 | AY461584 | chr4 | 2 | Good | Sb04g008780 | Os02g14840 | |
| kip1 | knotted interacting protein1 | GRMZM2G163761 | AY082396 | chr1 | GRMZM2G011588 | 1 | Good | Sb01g011970 | Os03g47730 |
| kn1 | knotted1 | GRMZM2G017087 | X61308 | chr1 | 1 | Missing 5' UTR | Sb01g009480 | Os03g51690 | |
| knox3 | knotted related homeobox3 | GRMZM2G000743 | DQ056238 | chr1 | 1 | Can't proof | Sb01g009480 | Os03g51710 | |
| lc1 | red leaf color1 | GRMZM5G822829 | M26227 | chr10 | 2 | Good|lc1 | Sb06g025060 | Os04g47059 | |
| lec1 | leafy cotyledon | GRMZM2G011789 | AF410176 | chr5 | 1 | Good | Sb04g029350 | Os02g49370 | |
| lem1 | lethal embryo mutant1 | AC234157.1_FG002 | AF332374 | chr1 | 1 | Good | Sb01g006910 | Os03g55930 | |
| les22 | lesion22 | GRMZM2G044074 | AF058763 | chr1 | 1 | Good | Sb01g036030 | Os03g22060 | |
| lg1 | liguleless1 | GRMZM2G036297 | AF451895 | chr2 | 1 | Good|upstream sequence on wrong contig | Sb06g031290 | Os04g56170 | |
| lg2 | liguleless2 | GRMZM2G060216 | AY180106 | chr3 | 1 | Good | Sb03g040530 | Os01g64020 | |
| lg3 | liguleless3 | GRMZM2G087741 | AF100455 | chr3 | 1 | Good | Sb03g012480 | Os01g19694 | |
| lg4 | liguleless4 | GRMZM2G094241 | AF457118 | chr8 | 2 | Good | Sb09g002520 | Os05g03884 | |
| lhcb1 | light harvesting chlorophyll a/b binding protein1 | GRMZM2G351977 | M87020 | chr8 | 2 | Can't proof | too big a gap | Os01g41710 | |
| lhcb2 | light harvesting chlorophyll a/b binding protein2 | AC207722.2_FG009 | X14794 | chr7 | GRMZM2G353753 | 1 | Good | Sb02g032040 | no synteny |
| lhcb3 | light harvesting chlorophyll a/b binding protein3 | GRMZM2G155216 | X55892 | chr8 | 2 | Good | Sb09g028720 | chr5:28058352-28684191 | |
| lhcb7 | light harvesting complex mesophyll7 | GRMZM2G402936 | X53398 | chr6 | 1 | Good | Sb09g028720 | chr5:28081764-28748003 | |
| lhcb9 | light harvesting chlorophyll binding protein9 | GRMZM2G018627 | X68682 | chr1 | GRMZM2G321320||GRMZM2G414192||GRMZM2G414195 | 1 | Good|near identical paralog: GRMZM2G414192 | Sb01g015400 | Os03g39610 |
| lkrsdh1 | lysine-ketoglutarate reductase /
saccharopine dehydrogenase1 |
GRMZM2G181362 | AF271636 | chr4 | 2 | Good | Sb04g035220 | Os02g54254 | |
| lls1 | lethal leaf spot1 | GRMZM2G339563 | U77345 | chr1 | 1 | Good | Sb01g047120 | Os03g05310 | |
| lop1 | lo1 pI allergen homolog1 | GRMZM2G072886 | AY197352 | chr9 | 2 | Good | Sb01g029880 | Os10g40090 | |
| lox1 | lipoxygenase1 | GRMZM2G156861 | DQ335760 | chr3 | GRMZM2G458554 | 1 | Two tandem duplicates merged into one gene by maizesequence.org? | Sb03g042440 | chr1:38780116-39263267 |
| lox3 | lipoxygenase3 | GRMZM2G109130 | AF465643 | chr1 | 1 | Good | Sb01g011040 | Os03g49260 | |
| lpa1 | low phytic acid1 | GRMZM2G155242 | AF323175 | chr1 | 1 | Good | Sb01g044290 | Os03g09250 | |
| lpa2 | low phytic acid2 | GRMZM2G456626 | AY172635 | chr1 | 1 | Good | Sb01g028090 | Os10g42550 | |
| lyce1 | lycopene epsilon cyclase1 | GRMZM2G012966 | EU924262 | chr8 | 2 | Good | Sb03g026020 | Os01g39960 | |
| mads1 | MADS1 | GRMZM2G171365 | AF112148 | chr9 | 2 | Good | Sb01g049020 | Os03g03100 | |
| mbf1 | multi-protein bridging factor homolog1 | GRMZM2G101480 | T14752 | chr4 | 2 | Good | Sb07g014940 | no synteny | |
| mdh2 | malate dehydrogenase2 | GRMZM2G154595 | AY103861 | chr6 | 1 | Good | Sb09g029240 | Os05g49880 | |
| mdh4 | malate dehydrogenase4 | GRMZM2G415359 | AA051891 | chr1 | 1 | Can't proof | Sb01g019280 | Os10g33800 | |
| me3 | NADP malic enzyme3 | GRMZM2G085019 | J05130 | chr3 | 1 | Good | Sb03g003220 | Os01g09320 | |
| meg1 | maternally expressed gene1 | GRMZM2G354335 | AY536120 | chr7 | GRMZM2G116212||GRMZM2G137959||GRMZM2G145466||GRMZM2G175896||GRMZM2G175912||GRMZM2G181051||GRMZM2G573952||GRMZM2G573956 | 1 | Maizesequence.org adds to extra exons | too big a gap | chr7:4506584-4989949 |
| mez1 | enhancer of zeste1 | GRMZM2G157820 | AF443596 | chr6 | 2 | Good | Sb10g004560 | too big a gap | |
| mgs1 | male-gametophyte specific1 | GRMZM2G317406 | S44171 | chr10 | 2 | weird | Sb06g014740 | Os04g32680 | |
| mha1 | membrane H(+)-ATPase1 | GRMZM2G104325 | U08985 | chr7 | 1 | Good | Sb02g005440 | Os07g09340 | |
| mha2 | plasma-membrane H+ATPase2 | GRMZM2G019404 | X85805 | chr2 | GRMZM2G314079 | 1 | Good | Sb06g031240 | Os04g56160 |
| mir1 | maize insect resistance1 | GRMZM2G150276 | AF019145 | chr6 | GRMZM2G150256 | 2 | Good | Sb10g027980 | chr6:28229592-28756822 |
| mlg3 | lea protein group3 | GRMZM2G096475 | U05226 | chr6 | 1 | Good | Sb09g027110 | Os05g46480 | |
| mn1 | miniature seed1 | GRMZM2G119689 | AF050631 | chr2 | 1 | Good|probably | too big a gap | Os04g33740 | |
| mop1 | mediator of paramutation1 | GRMZM2G042443 | DQ417755 | chr2 | GRMZM2G042532 | 1 | Can't proof | Sb06g019330 | Os04g39160 |
| mrp1 | Myb related protein1 | GRMZM2G111306 | AJ318518 | chr8 | 2 | Good | too big a gap | chr5:1836622-2596437 | |
| mrpa3 | multidrug resistance-associated protein3 | GRMZM2G111903 | AY609318 | chr9 | 1 | Good | Sb10g004070 | Os06g06440 | |
| ms26 | male sterile26 | GRMZM2G091822 | AF366297 | chr1 | 1 | Good | Sb01g045960 | Os03g07250 | |
| ms45 | male sterile45 | GRMZM2G307906 | AF360356 | chr9 | 2 | CDS wrong | Sb01g040250 | Os03g15700 | |
| mta1 | ribosomal protein | GRMZM2G090422 | T14712 | chr1 | 1 | Can't proof | Sb01g007690 | Os03g54860 | |
| mwp1 | milkweed pod1 | GRMZM2G082264 | EU925398 | chr7 | 1 | Good | Sb02g024110 | Os09g23200 | |
| myb2 | myb2 | AC203535.4_FG001 | AF458962 | chr3 | GRMZM5G826686||GRMZM5G882384 | 1 | Good | Sb03g044450 | chr1:40516492-40965296 |
| nac1 | NaCl stress protein1 | GRMZM2G015605 | T14760 | chr10 | 1 | Good | Sb09g003060 | Os05g04700 | |
| nbp1 | nucleic acid binding protein1 | GRMZM2G011129 | M74566 | chr7 | 1 | Good | Sb02g011330 | no synteny | |
| ndk1 | nucleotide diphosphate kinase1 | GRMZM2G134797 | T18831 | chr7 | 1 | Can't proof | Sb02g033710 | Os07g30970 | |
| nnr1 | nitrate reductase(NADH)1 | GRMZM2G568636 | M77792 | chr4 | 2 | Good | Sb07g022750 | Os08g36480 | |
| ns1 | narrow sheath1 | GRMZM2G069028 | AJ536578 | chr2 | 2 | Good | Sb05g003490 | no synteny | |
| o2 | opaque endosperm2 | GRMZM2G015534 | X15544 | chr7 | 1 | Good | Sb02g004590 | Os07g08420 | |
| ocl1 | outer cell layer1 | GRMZM2G026643 | Y17898 | chr3 | 1 | Good | Sb03g008090 | no synteny | |
| ocl2 | outer cell layer2 | AC235534.1_FG007 | AJ250984 | chr10 | 2 | Good | Sb06g025750 | Os04g48070 | |
| ocl3 | outer cell layer3 | GRMZM2G116658 | AJ250985 | chr7 | 1 | Good | Sb02g030470 | Os09g35760 | |
| ocl4 | outer cell layer4 | GRMZM2G123140 | AJ250986 | chr1 | GRMZM5G875327 | 1 | Good | Sb01g028160 | Os10g42490 |
| ocl5a | outer cell layer5a | GRMZM2G130442 | AJ250987 | chr4 | 2 | Good | Sb07g005180 | Os08g08820 | |
| ohp1 | opaque2 heterodimerizing protein1 | GRMZM2G016150 | L00623 | chr1 | GRMZM2G019446 | 1 | Good | Sb01g005170 | Os03g58250 |
| ohp2 | opaque2 heterodimerizing protein2 | GRMZM2G007063 | L06478 | chr5 | 2 | Good | Sb01g005170 | Os03g58250 | |
| ole1 | oleosin1 | GRMZM2G337229 | U13701 | chr2 | 1 | Good | Sb06g024350 | Os04g46200 | |
| ole3 | oleosin3 | AC206941.2_FG002 | J05212 | chr5 | 2 | 3' UTR split into separate gene model | Sb01g011120 | Os03g49190 | |
| orp1 | orange pericarp1 | GRMZM2G169593 | M76684 | chr4 | GRMZM5G896346 | 2 | Good | Sb07g002770 | Os08g04180 |
| orp2 | orange pericarp2 | GRMZM2G005024 | M76685 | chr10 | 1 | Split into two transcripts? | Sb07g002770 | Os08g04180 | |
| oy1 | oil yellow1 | GRMZM2G419806 | DQ084025 | chr10 | 1 | Good | Sb08g004300 | chr12:3388067-4083733 | |
| p1 | pericarp color1 | GRMZM2G084799 | U57002 | chr1 | 1 | 3' UTR missing | Sb01g037670 | Os03g19120 | |
| p2 | pericarp color2 | GRMZM2G057027 | AF210617 | chr1 | 1 | duplicate of P1 | Sb01g037690 | Os03g19120 | |
| pac1 | pale aleurone color1 | GRMZM2G058292 | AY115485 | chr5 | GRMZM5G872691 | 1 | Good|maizesequence.org includes more 5' UTR | Sb04g031730 | Os02g45810 |
| pal1 | phenylalanine ammonia lyase homolog1 | GRMZM2G074604 | M95077 | chr5 | GRMZM2G029048||GRMZM2G170692||GRMZM2G334655||GRMZM2G334660 | 1 | Can't proof | Sb04g026530 | Os02g41680 |
| pcna1 | proliferating cell nuclear antigen1 | GRMZM2G030523 | X79065 | chr5 | 1 | Good | Sb04g036440 | Os02g56130 | |
| pdc2 | pyruvate decarboxylase2 | GRMZM2G038821 | D14456 | chr8 | 2 | Good | Sb03g005240 | Os01g06660 | |
| pdc3 | pyruvate decarboxylase3 | GRMZM2G087186 | D14457 | chr1 | GRMZM5G841025 | 1 | Good | Sb01g038360 | Os03g18220 |
| pdi1 | protein disulfide isomerase1 | GRMZM2G091481 | AY739284 | chr4 | GRMZM2G393320 | 1 | Good | Sb05g006150 | Os11g09280 |
| pep1 | phosphoenolpyruvate carboxylase1 | GRMZM2G083841 | X15238 | chr9 | 1 | Good | Sb10g021330 | chr6:19969223-20504683 | |
| pep4 | phosphoenolpyruvate carboxylase4 | GRMZM2G473001 | X61489 | chr7 | 1 | Good | Sb02g021090 | Os09g14670 | |
| pex1 | pollen extensin-like1 | GRMZM5G841015 | Z34465 | chr2 | GRMZM2G453012 | 2 | Good | too big a gap | no synteny |
| pgd2 | 6-phosphogluconate dehydrogenase2 | GRMZM2G145715 | AF061837 | chr3 | 1 | Good | Sb03g045216 | chr1:41194784-41479544 | |
| pgl2 | polygalacturonase2 | GRMZM2G320175 | X57628 | chr6 | GRMZM2G058033||GRMZM2G153666||GRMZM2G160526||GRMZM2G160626||GRMZM2G162384||GRMZM2G306693||GRMZM5G880653 | 2 | Good | Sb10g024010 | Os06g40890 |
| pgl8 | exopolygalacturonase8 | GRMZM2G394259 | X64408 | chr6 | 2 | Good | Sb10g024010 | Os06g40890 | |
| phot1 | blue-light receptor phototropin 1 | GRMZM2G001457 | AF033263 | chr3 | 2 | Good | Sb08g000260 | Os11g01140 | |
| phyA1 | phytochromeA1 | GRMZM2G157727 | AY234826 | chr1 | GRMZM5G895731 | 1 | Good | Sb01g009920 | Os03g51030 |
| phyB1 | phytochromeB1 | GRMZM2G124532 | DQ307579 | chr1 | 1 | maizesequence.org CDS starts too late (insertion into B73 exon?) | Sb01g037340 | Os03g19590 | |
| phyB2 | phytochromeB2 | GRMZM2G092174 | AY234828 | chr9 | 2 | Good | Sb01g037340 | Os03g19590 | |
| phyC1 | phytochromeC1 | GRMZM2G057935 | AY234829 | chr1 | GRMZM2G357074 | 1 | Good | Sb01g007850 | Os03g54084 |
| phyC2 | phytochromeC2 | GRMZM2G129889 | AY234830 | chr5 | 2 | Good | Sb01g007850 | Os03g54084 | |
| piip1 | physical impedance induced protein1 | AC234161.1_FG001 | AF001634 | chr9 | AC234161.1_FG002 | 2 | Good | Sb01g029630 | Os10g40420 |
| pip1b | plasma membrane intrinsic protein1 | AC209208.3_FG002 | AF131201 | chr5 | 1 | maizesequence.org skips 3' UTR | Sb04g032430 | Os02g44630 | |
| pip1c | plasma membrane intrinsic protein1 | GRMZM2G392975 | AF326487 | chr4 | 2 | Good | Sb04g032430 | Os02g44630 | |
| pip1e | plasma membrane intrinsic protein1 | GRMZM2G081843 | AF326489 | chr4 | 2 | Good | Sb04g037800 | Os02g57720 | |
| pip1f | plasma membrane intrinsic protein1 | GRMZM2G136032 | AF326490 | chr9 | 1 | Good | Sb10g007610 | chr6:5814961-6206831 | |
| pip2a | plasma membrane intrinsic protein2 | GRMZM2G178693 | AF130975 | chr2 | 1 | Good | Sb06g023240 | Os04g44570 | |
| pip2b | plasma membrane intrinsic protein2 | GRMZM2G092125 | AF326492 | chr2 | 2 | Good | Sb02g010760 | too big a gap | |
| pip2c | plasma membrane intrinsic protein2 | GRMZM2G081192 | AF326493 | chr4 | GRMZM2G081333 | 2 | Good | Sb04g026650 | Os02g41860 |
| pip2d | plasma membrane intrinsic protein2 | GRMZM2G154628 | AF326494 | chr5 | 1 | Good | Sb04g032430 | Os02g44630 | |
| pip2e | plasma membrane intrinsic protein2 | GRMZM2G014914 | AF326491 | chr7 | GRMZM2G047368 | 1 | Good | Sb02g010760 | too big a gap |
| pip2f | plasma membrane intrinsic protein2 | GRMZM2G047368 | AF326495 | chr7 | 1 | Good | too big a gap | too big a gap | |
| pk4 | protein kinase4 | GRMZM2G014833 | AF141378 | chr3 | 1 | Good | Sb03g035170 | Os01g55450 | |
| pki1 | protein kinase inhibitor1 | GRMZM2G018728 | Z29643 | chr1 | 1 | Good | Sb01g036830 | Os03g20630 | |
| pl1 | purple plant1 | GRMZM2G701063 | AF015268 | chr6 | 2 | Good | Sb10g006700 | Os06g10350 | |
| plt1 | phospholipid transfer protein homolog1 | GRMZM2G101958 | J04176 | chr10 | 1 | Good | Sb08g002670 | no synteny | |
| plt2 | phospholipid transfer protein homolog2 | GRMZM2G010868 | U66105 | chr3 | 2 | Good | Sb08g002670 | Os11g02424 | |
| pmg1 | phosphoglycerate mutase1 | GRMZM5G833389 | Z33612 | chr8 | 2 | Good | Sb03g038020 | Os01g60190 | |
| ppp1 | pyrophosphate-energized proton pump1 | GRMZM2G090718 | T18800 | chr5 | 1 | 3' end half of gene sequence missing | Sb04g034340 | Os02g52940 | |
| ppr5 | pentatricopeptide repeat 5 | GRMZM2G025409 | EU037901 | chr4 | 2 | Good | Sb04g027800 | Os02g51480 | |
| prc1 | proteasome C9 1 | GRMZM2G120047 | T14766 | chr6 | 2 | Can't proof | Sb10g004740 | Os06g07140 | |
| prf1 | profilin homolog1 | GRMZM2G074361 | X73279 | chr6 | 1 | Good | Sb09g026120 | chr5:25962071-26565743 | |
| prh1 | ser/thr protein phosphatase1 | GRMZM2G112240 | M60215 | chr4 | 2 | Good | Sb04g037500 | Os02g57450 | |
| prp1 | pathogenesis-related protein1 | AC205274.3_FG001 | X54325 | chr8 | UTRs unannotated | no synteny | no synteny | ||
| prp2 | pathogenesis-related protein2 | GRMZM2G102356 | T18697 | chr2 | GRMZM5G809105 | 1 | Good | Sb06g019320 | Os04g39150 |
| ps1 | pink scutellum1 | GRMZM5G849107 | AY206862 | chr5 | GRMZM2G403196 | 1 | Good | Sb04g006120 | Os02g09750 |
| psei1 | cystatin1 | GRMZM2G438551 | AM055630 | chr3 | GRMZM5G858738 | 1 | Good | Sb03g037370 | Os01g58890 |
| psei2 | cystatin2 | GRMZM2G012160 | D63342 | chr8 | 2 | Good | Sb03g037370 | Os01g58890 | |
| ptk1 | protein kinase1 | GRMZM2G328785 | X52384 | chr6 | GRMZM2G328772 | 1 | Good | Sb09g008070 | no synteny |
| qm1 | QM1 homolog1 | GRMZM2G087233 | U06108 | chr5 | 2 | Good | Sb01g015470 | no synteny | |
| r1 | colored1 | GRMZM5G822829 | X15806 | chr10 | 2 | Good||lc1 | Sb06g025060 | Os04g47059 | |
| ra1 | ramosa1 | GRMZM2G003927 | AY957396 | chr7 | 1 | Good | Sb02g024400 | chr9:14417584-14918349 | |
| ra2 | ramosa2 | AC233943.1_FG002 | BT035538 | chr3 | 1 | UTR exon skipped my maizesequence.org | Sb03g004590 | Os01g07480 | |
| ra3 | ramosa3 | GRMZM2G014729 | DQ436920 | chr7 | 1 | Good | Sb02g039820 | Os07g43160 | |
| rab15 | responsive to abscisic acid15 | GRMZM2G165901 | X12564 | chr5 | GRMZM2G166026 | 2 | Good | Sb01g012300 | Os03g46770 |
| rbap1 | WD-repeat protein RBAP1 | GRMZM2G316113 | AF250047 | chr8 | 2 | Good | Sb03g032630 | Os01g51300 | |
| rel2 | ramosa1 enhancer locus2 | GRMZM2G042992 | GQ927145 | chr10 | 1 | Good | Sb07g004180 | Os08g06480 | |
| rf2 | restorer of fertility2 | GRMZM2G058675 | U43082 | chr9 | 1 | Good | Sb10g009790 | Os06g15990 | |
| rgd1 | ragged seedling1 | GRMZM2G020187 | DQ832257 | chr6 | Good | no synteny | no synteny | ||
| ris2 | iron-sulfur protein2 | GRMZM2G162748 | W49887 | GRMZM2G162805 | 1 | Can't proof | chr4:10212873-10952629 | Os02g15560 | |
| rld1 | rolled leaf1 | GRMZM2G109987 | AY501430 | chr9 | 2 | Good | Sb01g050000 | Os03g01890 | |
| rmr1 | required to maintain repression1 | GRMZM2G154946 | EU155001 | chr6 | GRMZM2G453655 | 1 | Good | Sb09g019410 | Os05g32610 |
| rnc1 | ribonuclease III domain protein1 | GRMZM2G035820 | EU971053 | chr3 | 1 | Good | Sb03g037610 | Os01g59510 | |
| rop2 | Rho-related protein from plants2 | GRMZM5G846811 | AY163379 | chr4 | 2 | Good | Sb04g001690 | Os02g02840 | |
| rp1 | resistance to Puccinia sorghi1 | AC152495.1_FG002 | AF107293 | chr10 | AC152495.1_FG003||GRMZM2G003625||GRMZM2G005134||GRMZM2G061742||GRMZM2G069382||GRMZM2G083246||GRMZM2G083258||GRMZM2G165720||GRMZM5G833046 | 1 | 5' and 3' UTR exons missed by maizesequence.org | Sb08g002410 | no synteny |
| rpl17 | ribosomal protein L17 | GRMZM2G702426 | AF034948 | chr4 | 2 | Good | Sb07g026305 | Os08g41810 | |
| rpot1 | RNA polymerase T phage-like 1 | GRMZM2G381395 | AF127021 | chr7 | 1 | Good | Sb02g039520 | chr7:25585675-26175382 | |
| rps11 | ribosomal protein S11 | GRMZM2G019325 | X55967 | chr10 | 2 | Good | Sb06g028330 | Os04g52354 | |
| rps4 | ribosomal protein S4 | GRMZM2G035017 | AF015522 | chr1 | 1 | Good | Sb01g001850 | chr3:35199453-35652824 | |
| rrb1 | related to retinoblastoma1 | GRMZM2G003043 | AF007793 | chr2 | 2 | Good | Sb05g020280 | Os11g32900 | |
| rs1 | rough sheath1 | GRMZM2G028041 | L44133 | chr7 | 1 | Good | Sb02g002200 | Os07g03770 | |
| rs2 | rough sheath2 | GRMZM2G403620 | AF143447 | chr1 | 1 | Good | Sb08g018840 | Os12g38400 | |
| rtcs1 | rootless concerning crown and seminal roots1 | GRMZM2G092542 | EF051732 | chr1 | GRMZM2G092483 | 1 | Good | Sb01g046990 | Os03g05510 |
| rth1 | roothair defective1 | GRMZM2G099056 | AY265854 | chr1 | 1 | Good | Sb01g014290 | Os03g42750 | |
| rth3 | roothair defective3 | GRMZM2G377215 | AY265855 | chr1 | 1 | Good | Sb01g037850 | Os03g18910 | |
| rtp1 | Zea root preferential4 | GRMZM2G017557 | L14063 | chr4 | 1 | Good | Sb05g006910 | too big a gap | |
| sal1 | supernumerary aleurone1 | GRMZM2G117935 | AY243475 | chr9 | 1 | Good | Sb10g025200 | Os06g43590 | |
| sam2 | S-adenosyl methionine decarboxylase2 | GRMZM2G154397 | W99255 | chr2 | 1 | Can't proof | Sb06g021540 | Os04g42090 | |
| sar1 | SAR homolog1 | GRMZM2G038356 | T14655 | chr3 | 1 | Good | Sb03g013550 | Os01g23620 | |
| sbe1 | starch branching enzyme1 | GRMZM2G088753 | D11081 | chr5 | 1 | Good | Sb10g030776 | Os06g51084 | |
| sbe3 | starch branching enzyme3 | GRMZM2G073054 | U65948 | chr2 | 1 | Good | Sb06g015360 | Os04g33460 | |
| sci1 | subtilisin-chymotrypsin inhibitor homolog1 | GRMZM2G028393 | X69972 | chr8 | GRMZM2G028656||GRMZM2G042789 | 2 | Good | too big a gap | too big a gap |
| scm1 | self-colored marbled1 | GRMZM5G822829 | AF135458 | chr10 | 2 | can't proof|lc1 | Sb06g025060 | Os04g47059 | |
| sdh1 | sorbitol dehydrogenase homolog1 | GRMZM2G175423 | DQ191049 | chr1 | 1 | Good | Sb07g025220 | Os08g43190 | |
| sgo1 | shugoshin centromeric cohesion1 | GRMZM2G074082 | AY964185 | chr7 | 1 | Good | Sb02g006220 | too big a gap | |
| sh1 | shrunken1 | GRMZM2G089713 | X02400 | chr9 | GRMZM2G090962||GRMZM2G090974 | 1 | Extra 5' UTR in maizesequence.org | Sb10g006330 | Os06g09450 |
| sh2 | shrunken2 | GRMZM2G429899 | M81603 | chr3 | 1 | extra (coding)exons in maizesequence.org | Sb03g028850 | Os01g44220 | |
| si1 | silky1 | GRMZM2G139073 | AF181479 | chr6 | 2 | Good | Sb10g029810 | Os06g49840 | |
| Smh1 | Single Myb Histone1 | GRMZM2G136887 | AY271659 | chr8 | 2 | Good | Sb03g026470 | Os01g40670 | |
| Smh2 | Single Myb Histone2 | GRMZM2G087817 | chr3 | 1 | No GenBank Record|personal communication | Sb03g026470 | Os01g40670 | ||
| Smh3 | Single Myb Histone3 | GRMZM2G023667 | AY280629 | chr8 | 2 | Good | Sb03g032540 | Os01g51170 | |
| Smh4 | Single Myb Histone4 | GRMZM2G108424 | AY280631 | chr3 | 1 | Good | Sb03g032530 | Os01g51154 | |
| Smh5 | Single Myb Histone5 | GRMZM2G163291 | AY280630 | chr3 | 1 | Good | Sb03g005080 | chr1:2844116-3337953 | |
| Smh6 | Single Myb Histone6 | GRMZM2G095239 | AY280632 | chr5 | 2 | Good | Sb01g013670 | no synteny | |
| sn1 | scutellar node color1 | GRMZM5G822829 | X60706 | chr10 | 2 | Good|lc1 | Sb06g025060 | Os04g47059 | |
| sod2 | superoxide dismutase2 | GRMZM2G025992 | M54936 | chr7 | GRMZM2G027777 | 1 | Good | Sb02g042170 | Os07g46990 |
| sod3 | superoxide dismutase3 | GRMZM2G059991 | M33119 | chr6 | 1 | Good | too big a gap | Os05g25850 | |
| sod4 | superoxide dismutase4 | GRMZM2G169890 | X17565 | chr1 | 1 | Good | Sb01g035350 | Os03g22810 | |
| sod9 | superoxide dismutase9 | GRMZM2G058522 | X17564 | chr9 | 2 | Good | Sb01g035350 | Os03g22810 | |
| spi1 | sparse inflorescence1 | GRMZM2G025222 | EU910940 | chr3 | NA | 5' end of CDS lost in gap | no synteny | no synteny | |
| spp1 | sucrose-phosphatase1 | GRMZM2G055489 | AF283564 | chr8 | 2 | Good | chr9:52109989-52638612 | chr5:22388038-22888762 | |
| sps1 | sucrose phosphate synthase1 | GRMZM5G875238 | M97550 | chr8 | 2 | Good | Sb03g043900 | Os01g69030 | |
| ss1 | starch synthase I | GRMZM2G129451 | AF036891 | chr9 | 1 | Good | Sb10g004160 | Os06g06560 | |
| ssu1 | ribulose bisphosphate carboxylase small subuni | GRMZM2G098520 | X06535 | chr4 | 1 | Good | Sb05g003480 | too big a gap | |
| ssu2 | ribulose bisphosphate carboxylase small subuni | GRMZM2G113033 | Y09214 | chr2 | 2 | Good | Sb05g003480 | no synteny | |
| stc1 | sesquiterpene cyclase1 | GRMZM2G177098 | AF296122 | chr9 | GRMZM2G177211 | 1 | Good | Sb10g006160 | chr6:4114082-4703565 |
| stk1 | serine threonine kinase1 | GRMZM2G165433 | EF523347 | chr9 | GRMZM2G465296 | 1 | Good | Sb10g006130 | Os06g09230 |
| stp1 | sugar transport1 | GRMZM2G097768 | T12737 | chr8 | 2 | Can't proof | Sb09g029520 | Os05g50280 | |
| su1 | sugary1 | GRMZM2G138060 | U18908 | chr4 | 2 | Missing 5' coding region? | Sb07g027200 | Os08g40930 | |
| su2 | sugary2 | GRMZM2G348551 | AY499410 | chr6 | 2 | 5' UTR and upsteam sequence missing | Sb10g008200 | Os06g12450 | |
| Sun1 | sad1-unc84-like 1 CCSD type | GRMZM2G109818 | EU964563 | chr5 | 1 | personal communication | Sb04g005160 | chr2:4152195-4473675 | |
| Sun2 | sad1-unc84-like 2 CCSD type | GRMZM2G440614 | BT055722 | chr3 | 1 | personal communication | Sb03g010590 | Os01g16220 | |
| Sun4 | sad1-unc84-like 4 PM3 type | GRMZM2G005483 | GU453173 | chr8 | 2 | personal communication | Sb03g041510 | Os01g65520 | |
| Sun5 | sad1-unc84-like 5 PM3 type | AC194341.4_FG003 | EU953247 | chr8 | 2 | personal communication | Sb03g026980 | Os01g41600 | |
| sus1 | sucrose synthase1 | GRMZM2G152908 | L33244 | chr9 | 2 | Good | Sb01g033060 | Os03g28330 | |
| sxd1 | sucrose export defective1 | GRMZM2G009785 | AF302187 | chr5 | 1 | Good | Sb04g010660 | Os02g17650 | |
| tacs1 | Terminal Acidic SANT 1 | GRMZM2G111906 | AY738116 | chr6 | 2 | Good | chr10:59803993-60610533 | chr6:30308446-31043218 | |
| taf1 | transcription associated factor1 | GRMZM2G002276 | T12672 | chr3 | 1 | Can't proof | Sb03g039720 | Os01g62820 | |
| tan1 | tangled1 | GRMZM2G039113 | AF305892 | chr6 | 1 | Good | Sb09g018850 | chr5:18275913-19077686 | |
| tb1 | teosinte branched1 | AC233950.1_FG002 | U94494 | chr1 | 1 | Good | Sb01g010690 | Os03g49880 | |
| tbp2 | TATA-binding protein2 | GRMZM2G161418 | L13302 | chr5 | 2 | Good | Sb01g012880 | Os03g45410 | |
| tdy1 | tie-dyed1 | GRMZM2G321778 | FJ376984 | chr6 | 1 | Good | Sb09g029660 | Os05g50470 | |
| te1 | terminal ear1 | GRMZM2G085113 | AF047852 | chr3 | 1 | Good | Sb03g043230 | Os01g68000 | |
| tga1 | teosinte glume architecture1 | GRMZM2G101511 | AY883559 | chr4 | AC233751.1_FG002 | 2 | Good | Sb07g026220 | Os08g41940 |
| tha1 | thylakoid assembly1 | chr3:58008644 | U71123 | chr3 | No gene model | ||||
| tif1 | translation initiation factor1 | GRMZM5G835323 | AF034944 | chr7 | 1 | Good | Sb02g035170 | Os07g34589 | |
| tif5A | eukaryotic translation initiation factor 5A | GRMZM2G144030 | AF034943 | chr7 | 1 | Good | Sb02g038290 | Os07g40580 | |
| tlk1 | tousled-like protein kinase1 | GRMZM2G016671 | AY644701 | chr1 | 1 | Good | Sb01g008020 | Os03g53880 | |
| tlk2 | tousled-like protein kinase2 | GRMZM2G172132 | AF012889 | chr5 | 2 | Can't proof | Sb01g008020 | Os03g53880 | |
| tm20 | transmembrane protein20 | GRMZM2G036564 | X97570 | chr6 | GRMZM2G313761 | 2 | Good | Sb10g010780 | no synteny |
| tpi4 | triose phosphate isomerase4 | GRMZM2G018177 | L00371 | chr8 | 2 | Good | Sb03g006130 | Os01g05490 | |
| trh1 | thioredoxin h homolog1 | GRMZM2G424053 | T15273 | chr6 | 1 | Good | Sb09g024960 | chr5:25057494-25544351 | |
| ts1 | tassel seed1 | GRMZM2G104843 | FJ360855 | chr2 | 1 | Good | Sb06g018040 | Os04g37430 | |
| ts2 | tassel seed2 | GRMZM2G455809 | L20621 | chr1 | 1 | Good | Sb01g038050 | Os03g18740 | |
| ts4 | tasselseed4 | GRMZM5G803935 | GQ905588 | chr3 | 1 | why does a microRNA have a CDS? | chr3:73688749-74313024 | chr1:42689358-43324564 | |
| ts6 | tasselseed6 | GRMZM5G862109 | AF048900 | chr1 | GRMZM5G880027 | 1 | Good | Sb01g003400 | Os03g60430 |
| tsh1 | tasselsheath1 | GRMZM2G325850 | chr6 | 1 | No GenBank Record|gene name in publication | Sb09g029510 | Os05g50270 | ||
| tua1 | alpha tubulin1 | AC195340.3_FG001 | X63176 | chr5 | 2 | Good | Sb01g006710 | Os03g56810 | |
| tua4 | alpha tubulin4 | GRMZM2G152466 | X73980 | chr5 | 2 | Good | Sb01g009560 | Os03g51600 | |
| tua5 | alpha tubulin5 | GRMZM2G099167 | X63177 | chr2 | GRMZM2G333258 | 2 | Good | Sb02g037260 | Os07g38730 |
| tua6 | alpha tubulin6 | GRMZM2G083243 | X63178 | chr7 | GRMZM2G083590 | 1 | Good | Sb02g037260 | Os07g38730 |
| tub1 | beta tubulin1 | GRMZM2G164696 | X52878 | chr1 | 1 | Good | Sb01g050310 | Os03g01530 | |
| tub2 | beta tubulin2 | GRMZM2G334899 | X52879 | chr8 | 2 | Good | Sb09g020360 | Os05g34170 | |
| tub3 | beta tubulin3 | GRMZM2G108766 | X74654 | chr1 | 1 | Good | Sb01g012740 | Os03g45920 | |
| tub4 | beta tubulin4 | GRMZM2G066191 | X74655 | chr5 | 2 | Good | Sb01g012740 | Os03g45920 | |
| tub6 | beta tubulin6 | GRMZM2G071790 | L10633 | chr3 | GRMZM5G857152 | 1 | Good | Sb03g037490 | Os01g59150 |
| ubi2 | ubiquitin2 | GRMZM2G419891 | S94466 | chr4 | GRMZM2G118637||GRMZM2G419844 | 2 | Good | Sb04g004260 | Os02g06640 |
| uce1 | ubiquitin conjugating enzyme1 | GRMZM2G018447 | T18767 | chr3 | 2 | Good | Sb08g022990 | Os12g44000 | |
| ugp1 | UDP-glucose pyrophosphorylase1 | GRMZM2G032003 | T14797 | chr7 | 1 | Can't proof | Sb02g032250 | Os09g38030 | |
| vacs1 | vacuolar sorting receptor homolog1 | GRMZM2G067546 | AY105262 | chr9 | 2 | Good | Sb01g036170 | Os03g21720 | |
| vp1 | viviparous1 | GRMZM2G133398 | M60214 | chr3 | 1 | Good | Sb03g043480 | Os01g68370 | |
| vp10 | viviparous10 | GRMZM2G067176 | DQ231522 | chr10 | 2 | Good | Sb06g031680 | Os04g56620 | |
| vp14 | viviparous14 | GRMZM2G014392 | U95953 | chr1 | 1 | Good | Sb01g013520 | Os03g44380 | |
| vp15 | viviparous15 | GRMZM2G121468 | DQ273133 | chr5 | GRMZM2G421883 | 1 | Good | Sb04g022920 | Os02g35200 |
| vp5 | viviparous5 | GRMZM2G410515 | AF039585 | chr1 | 1 | Can't proof | Sb01g044990 | Os03g08570 | |
| vp8 | viviparous8 | GRMZM2G010353 | EU401893 | chr1 | 1 | Good | Sb01g005710 | Os03g57660 | |
| vpp1 | vacuolar proton pump homolog1 | GRMZM2G014240 | AY103622 | chr9 | 1 | Good | Sb10g005250 | Os06g08080 | |
| wc1 | white cap1 | GRMZM2G057243 | DQ100346 | chr9 | 2 | Good | Sb01g047540 | too big a gap | |
| whp1 | white pollen1 | GRMZM2G151227 | X60204 | chr2 | GRMZM2G027130||GRMZM5G818346 | 2 | Good | too big a gap | Os11g32540 |
| why1 | whirly1 | GRMZM2G155662 | EU595664 | chr6 | 2 | Good | Sb10g003170 | no synteny | |
| wip1 | wound induced protein1 | GRMZM2G156632 | X71396 | chr8 | 2 | Good | Sb03g007180 | Os01g04050 | |
| wtf1 | what's this factor?1 | GRMZM2G403797 | FJ264201 | chr8 | 2 | Good | Sb09g029040 | Os05g49610 | |
| wx1 | waxy1 | GRMZM2G024993 | X03935 | chr9 | 1 | Good | Sb10g002140 | Os06g04200 | |
| xyl1 | xylanase1 | GRMZM2G170839 | AF063865 | chr1 | Good | no synteny | no synteny | ||
| yab10 | yabby homolog10 | GRMZM2G167824 | AY313904 | chr1 | 1 | Good | Sb01g017560 | Os10g36420 | |
| yab14 | yabby14 | GRMZM2G005353 | AY313901 | chr10 | 2 | Good | Sb06g023770 | Os04g45330 | |
| yab15 | yabby15 | GRMZM2G529859 | AY313902 | chr5 | 1 | Good | Sb04g033590 | Os02g42950 | |
| yab9 | yabby9 | GRMZM2G074543 | AY313903 | chr5 | 2 | Good | Sb01g017560 | Os10g36420 | |
| ypt1 | ypt homolog1 | GRMZM2G086971 | X63277 | chr2 | 1 | Good | Sb06g017640 | chr4:21509416-21975014 | |
| ys1 | yellow stripe1 | GRMZM2G156599 | AF186234 | chr5 | 1 | Good | Sb04g033345 | Os02g43370 | |
| yy1 | yin-yang1 | GRMZM2G140016 | AF142322 | chr4 | 2 | Good | Sb04g022470 | Os02g34680 | |
| zag1 | Zea AGAMOUS homolog1 | GRMZM2G052890 | L18924 | chr6 | GRMZM2G052937 | 1 | Good | Sb09g006360 | Os05g11414 |
| zag2 | Zea AGAMOUS homolog2 | GRMZM2G160687 | L18925 | chr3 | 2 | Good | Sb08g006460 | Os12g10540 | |
| zag4 | zea agamous4 | GRMZM2G531231 | L46399 | chr9 | 1 | weird gene model | Sb10g004390 | Os06g06750 | |
| zag5 | zea agamous5 | GRMZM2G003514 | L46398 | chr4 | 2 | Good | Sb04g031750 | Os02g45770 | |
| zap1 | zea apetala homolog1 | GRMZM2G148693 | chr2 | 2 | Assignment corrected by maizesequence.org | ||||
| zcn1 | phosphatidylethanolamine-binding protein1 | GRMZM2G092008 | EU241917 | chr3 | 2 | Good | Sb08g003210 | Os12g05590 | |
| zcn10 | phosphatidylethanolamine-binding protein10 | GRMZM2G152689 | EU241926 | chr3 | 1 | Good | Sb03g008270 | Os01g02120 | |
| zcn11 | phosphatidylethanolamine-binding protein11 | GRMZM2G117057 | EU241927 | chr6 | 2 | Good | Sb10g013070 | no synteny | |
| zcn12 | phosphatidylethanolamine-binding protein12 | GRMZM2G103666 | EU241928 | chr3 | 1 | Good | Sb03g034580 | Os01g54490 | |
| zcn13 | phosphatidylethanolamine-binding protein13 | GRMZM2G108016 | EU241904 | chr5 | 1 | Good | Sb04g008320 | Os02g13830 | |
| zcn14 | phosphatidylethanolamine-binding protein14 | GRMZM2G373928 | EU241929 | chr8 | 2 | Maybe annotated as pseudogene? | Sb03g001700 | Os01g11940 | |
| zcn15 | phosphatidylethanolamine-binding protein15 | GRMZM2G051338 | EU241930 | chr6 | 2 | 5' UTR unannotated by maizesequence.org | Sb10g003940 | Os06g06320 | |
| zcn16 | phosphatidylethanolamine-binding protein16 | GRMZM2G127121 | EU241931 | chr5 | 1 | Good | Sb04g025210 | Os02g39064 | |
| zcn17 | phosphatidylethanolamine-binding protein17 | GRMZM2G075215 | EU241932 | chr2 | NA | Good | no synteny | no synteny | |
| zcn18 | phosphatidylethanolamine-binding protein18 | GRMZM2G158809 | EU241933 | chr2 | 2 | Good | Sb02g029725 | Os09g33850 | |
| zcn19 | phosphatidylethanolamine-binding protein19 | GRMZM2G062052 | EU241934 | chr10 | 2 | Good | Sb06g020850 | Os04g41130 | |
| zcn2 | phosphatidylethanolamine-binding protein2 | GRMZM2G156079 | EU241893 | chr4 | 2 | Good | too big a gap | no synteny | |
| zcn20 | phosphatidylethanolamine-binding protein20 | AC214791.2_FG002 | EU241935 | chr10 | 1 | 3' UTR unannotated | Sb08g008180 | no synteny | |
| zcn3 | phosphatidylethanolamine-binding protein3 | GRMZM2G338454 | EU241919 | chr10 | 1 | 5' end of gene lost in a gap | Sb08g003210 | Os12g05590 | |
| zcn4 | phosphatidylethanolamine-binding protein4 | GRMZM2G075081 | EU241920 | chr2 | 1 | Good | Sb06g015490 | Os04g33570 | |
| zcn5 | phosphatidylethanolamine-binding protein5 | AC217051.3_FG006 | EU241921 | chr10 | 2 | Good | Sb06g015490 | Os04g33570 | |
| zcn6 | phosphatidylethanolamine-binding protein6 | GRMZM2G132880 | EU241922 | chr4 | 1 | Good | Sb05g003200 | Os11g05470 | |
| zcn7 | phosphatidylethanolamine-binding protein7 | GRMZM2G141756 | EU241923 | chr6 | 1 | Good | Sb09g025760 | Os05g44180 | |
| zcn8 | phosphatidylethanolamine-binding protein8 | GRMZM2G179264 | EU241924 | chr8 | 2 | Good | Sb09g025760 | Os05g44180 | |
| zcn9 | phosphatidylethanolamine-binding protein9 | GRMZM2G021614 | EU241925 | chr8 | 2 | Good | Sb03g008270 | Os01g02120 | |
| zfl1 | zea floricaula/leafy1 | GRMZM2G098813 | AY179882 | chr10 | 2 | Good | Sb06g027340 | Os04g51000 | |
| zfl2 | Zea floricaula leafy2 | GRMZM2G180190 | AY179881 | chr2 | 1 | Good | Sb06g027340 | Os04g51000 | |
| zmm2 | Zea mays MADS2 | GRMZM2G359952 | X81200 | chr8 | 2 | Good | Sb03g002525 | Os01g10504 | |
| zmm24 | Zea mays MADS24 | GRMZM2G087095 | AJ430638 | chr1 | GRMZM2G032339 | 1 | Good | Sb01g007790 | Os03g54160 |
| zmm31 | Zea mays MADS31 | GRMZM2G071620 | AJ430640 | chr5 | GRMZM2G553379 | 2 | Good | Sb01g007790 | Os03g54160 |
| zmm6 | Zea mays MADS6 | GRMZM2G159397 | AJ430692 | chr1 | GRMZM2G098986 | 1 | Good | Sb07g026180 | Os08g41950 |
| zmm7 | Zea mays MADS7 | GRMZM2G129034 | Y09302 | chr2 | 2 | Good | Sb02g029310 | Os09g32948 | |
| zmm8 | Zea mays MADS8 | GRMZM2G102161 | Y09303 | chr9 | 2 | Good | Sb01g042840 | Os03g11614 | |
| znf1 | zinc finger protein1 | GRMZM5G836222 | W99253 | GRMZM5G803160 | 1 | Good | Sb10g024060 | Os06g41010 | |
| zp1 | zein alpha protein1 | GRMZM2G008913 | X58700 | chr4 | 2 | Good|inversion in nongene sequence downstream of gene | too big a gap | too big a gap | |
| zp15 | zein protein | GRMZM2G086294 | M12147 | chr6 | 1 | Good | Sb09g000360 | chr5:0-218039 | |
| zp27 | 27-kDa zein protein | GRMZM2G138727 | M16218 | chr7 | GRMZM2G438538 | 1 | Good | Sb02g025510 | chr9:15882395-16462627 |
| zpl2b | zein polypeptidesL2b | GRMZM2G404459 | AF371270 | chr4 | GRMZM2G018193||GRMZM2G053120||GRMZM2G059620||GRMZM2G353268||GRMZM2G353272||GRMZM2G489581||GRMZM2G514379||GRMZM2G514469||GRMZM2G514479||GRMZM2G514485||GRMZM2G518465||GRMZM2G545000||GRMZM2G586611 | 1 | Good | too big a gap | chr11:22583954-23404386 |