Gene Gene Full Name B73v2 GRMZM GenBank ID Chromosome Local duplicates Subgenome Gene Comments, JS Sorghum Ortholog Rice Ortholog
a1 anthocyaninless1 GRMZM2G026930 X05068 chr3 1 Good Sb03g028890 Os01g44260
a2 anthocyaninless2 GRMZM2G345717 X55314 chr5 1 Good Sb04g000260 chr2:0-600403
a4 anthocyaninless4 GRMZM2G013726 Y16040 chr8 2 Good|inverted repeats surround gene Sb03g028890 Os01g44260
abp1 auxin binding protein1 GRMZM2G116204 L08425 chr3 2 Good Sb08g016760 too big a gap
abp4 auxin binding protein homolog4 GRMZM2G064371 L08426 chr10 GRMZM2G078508 1 Good Sb08g016760 Os12g34450
abph1 aberrant phyllotaxy1 GRMZM2G035688 AB042260 chr2 1 Good Sb06g022960 Os04g44280
acc1 acetyl-coenzyme A carboxylase1 GRMZM5G858094 Z24449 chr2 NA Good no synteny no synteny
act1 actin1 GRMZM2G126010 J01238 chr8 GRMZM2G126069 2 Good Sb09g021660 Os05g36290
add1 alternative discordia1 GRMZM2G120178-GRMZM2G050800 FJ469779 2 Gene split by|exons completely lost Sb09g003830 Os05g05710
adf1 actin depolymerizing factor1 GRMZM2G117603 X80820 chr7 1 Good Sb02g033380 Os07g30090
adh1 alcohol dehydrogenase1 GRMZM2G442658 X00580 chr1 1 Good Sb01g008730 chr3:30154185-30678637
adh2 alcohol dehydrogenase2 GRMZM2G098346 X02915 chr4 1 Good Sb05g009360 Os11g10480
ae1 amylose extender1 GRMZM2G032628 L08065 chr5 1 Good Sb04g021540 Os02g32660
afd1 absence of first division1 GRMZM2G059037 AY788900 chr6 1 Good Sb09g029640 Os05g50410
ahh1 adenosyl homocysteine hydrolase1 GRMZM2G015295 AW424691 chr4 GRMZM2G494688 1 Can't proof too big a gap Os11g26850
akh1 aspartate kinase-homoserine dehydrogenase1 GRMZM2G365423-GRMZM2G389303-GRMZM2G437977 L33912 chr4 2 Gene split by three genes too big a gap no synteny
akh2 aspartate kinase homoserine dehydrogenase2 GRMZM2G104546 L33913 chr2 2 Good Sb02g019450 no synteny
ald1 aldolase1 GRMZM2G057823 X12872 chr3 1 Good Sb03g043140 Os01g67860
am1 ameiotic1 GRMZM5G883855 DQ663482 chr5 2 Good Sb01g013215 Os03g44760
amya3 alpha amylase3 GRMZM2G138468 L25805 chr2 GRMZM2G566151 2 Good Sb02g026610 Os09g28400
amyb5 beta amylase5 GRMZM2G058310 Z25871 chr7 GRMZM2G358467 1 Good Sb02g035600 Os07g35940
an1 anther ear1 GRMZM2G081554 L37750 chr1 1 Good Sb01g021990 chr10:13517249-14258420
ane1 androgenic embryo1 GRMZM2G039942 AJ011559 chr4 NA Good no synteny no synteny
ane3 androgenic embryo3 GRMZM2G372553 AJ307880 chr10 1 Can't proof Sb07g003415 chr8:2932877-3054776
ant2 adenine nucleotide translocator2 GRMZM2G135186 X15712 chr4 2 Good Sb04g029750 Os02g48720
apt1 aberrant pollen transmission1 GRMZM2G448687 DQ020097 chr9 2 Good Sb01g035230 Os03g23030
arpp1a acidic ribosomal protein P1a GRMZM2G032315 U62752 chr6 1 Good Sb07g001570 Os08g02340
arpp2a acidic ribosomal protein P2a GRMZM2G119809 X86553 chr8 GRMZM2G102891||GRMZM2G105712 2 Good Sb09g029390 chr5:28584191-29087363
atp1 ATPase1 GRMZM2G101020 M95063 chr3 2 Good Sb08g004390 Os12g07140
b1 colored plant1 GRMZM2G172795 X57276 chr2 1 Missing internal exon (gene model and pseudomolecule) Sb06g025060 Os04g47059
ba1 barren stalk1 GRMZM2G397518 AY753892 chr3 1 Good Sb03g038820 Os01g61480
bap2 basal layer antifungal protein2 GRMZM2G152655 AJ133529 chr4 GRMZM2G027472 2 Good Sb07g003420 too big a gap
bd1 branched silkless1 GRMZM2G307119 AY196003 chr7 1 Good Sb02g042400 Os07g47330
bde1 bearded-ear1 GRMZM2G160565 L46397 chr5 1 Good Sb04g031750 Os02g45770
betl3 basal endosperm transfer layer3 GRMZM2G175976 AJ133530 chr3 2 Good too big a gap no synteny
bif2 barren inflorescence2 GRMZM2G171822 EF532402 chr1 1 deletion within first exon Sb08g021520 Os12g42050
bip1 Binding protein homolog1 GRMZM2G114793 U58208 chr5 1 Good Sb04g001140 Os02g02410
bm1 brown midrib1 GRMZM5G844562 AJ005702 chr5 GRMZM5G868202 1 Good Sb04g005950 Os02g09490
bm3 brown midrib3 AC196475.3_FG004 M73235 chr4 2 Good Sb07g003860 Os08g06100
brk1 brick1 GRMZM5G842058 AY093614 chr5 1 Good Sb04g038300 Os02g58320
bsd2 bundle sheath defective2 GRMZM2G062788 AF126742 chr1 1 Good chr8:49843172-50129204 chr12:23768068-24054915
bt1 brittle endosperm1 GRMZM2G144081 M79333 chr5 1 Good Sb04g007010 no synteny
bt2 brittle endosperm2 GRMZM2G068506 AF544167 chr4 2 Good|potentially missing upstream exons too big a gap no synteny
bx1 benzoxazinless1 GRMZM2G085381 X76713 chr4 1 Good chr5:58868109-59571565 chr11:25708564-25959495
bx2 benzoxazinone synthesis2 GRMZM2G085661 X81831 chr4 1 Good Sb05g026080 Os11g41710
bx3 benzoxazinone synthesis3 GRMZM2G167549 X81829 chr4 GRMZM2G172491||GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 1 Good Sb05g026065 chr11:25708564-25959495
bx4 benzoxazinone synthesis4 GRMZM2G172491 X81827 chr4 GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 1 Good Sb05g026065 chr11:25708564-25959495
bx5 benzoxazinone synthesis5 GRMZM2G063756 X81830 chr4 GRMZM2G167549||GRMZM2G172491||GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 1 Good Sb05g026080 chr11:25708564-25959495
bz1 defective kernel1 GRMZM2G165390 X07937 chr9 1 Good Sb10g006140 Os06g09240
bz2 bronze2 GRMZM2G016241 U14599 chr1 1 Good Sb01g022080 chr10:13445230-14195619
c1 colored aleurone1 GRMZM2G005066 X52201 chr9 1 Missing 3' UTR in Sb10g006700 Os06g10350
c2 colorless2 GRMZM2G422750 X60205 chr4 1 Good Sb05g020150 Os11g32650
caf2 crs2 associated factor2 AC199526.5_FG003 AY264369 chr3 1 Good Sb03g013160 Os01g21990
cal1 calmodulin1 GRMZM2G117582 X74490 chr6 1 Good Sb09g024030 Os05g41270
cal2 calmodulin2 GRMZM2G067511 X77397 chr3 1 Good chr3:10895034-11088655 Os01g16240
cal3 calmodulin3 GRMZM2G152891 X77396 chr1 GRMZM2G452760 1 Good Sb01g037010 Os03g20370
cap1 calcium pump1 GRMZM2G056014 AF096871 chr8 2 Good Sb09g001850 Os05g02940
cat1 catalase1 GRMZM2G088212 X60135 chr5 1 Good Sb10g030840 Os06g51150
cat2 catalase2 GRMZM2G090568 X54819 chr1 1 Good Sb01g048280 Os03g03910
cat3 catalase3 GRMZM2G079348 L05934 chr4 2 Good Sb04g001130 Os02g02400
ccp1 cysteine protease1 GRMZM2G098298 D45402 chr5 1 Good too big a gap too big a gap
ccp2 cysteine protease2 GRMZM2G038636 X99936 chr7 1 Good Sb02g025920 Os09g27030
cdj2 chaperone DNA J2 GRMZM2G364069 AF053468 chr1 1 Good Sb01g013390 Os03g44620
cesa1 cellulose synthase1 GRMZM2G112336 AF200525 chr8 2 Good Sb09g005280 too big a gap
cesa2 cellulose synthase2 GRMZM2G027723 AF200526 chr6 1 Good Sb09g005280 Os05g08370
cesa3 cellulose synthase3 GRMZM2G039454 AF200527 chr3 1 Good Sb03g004310 chr1:3437238-3858481
cesa5 cellulose synthase5 GRMZM2G111642 AF200529 chr1 GRMZM2G111837 1 Good Sb01g004210 Os03g59340
cesa6 cellulose synthase6 GRMZM2G113137 AF200530 chr1 1 Good Sb01g002050 Os03g62090
cesa7 cellulose synthase7 GRMZM2G025231 AF200531 chr7 1 Good Sb02g010110 Os07g24190
cesa8 cellulose synthase8 GRMZM2G177631 AF200532 chr7 1 Good Sb02g007810 too big a gap
cesa9 cellulose synthase9 GRMZM2G018241 AF200533 chr2 GRMZM2G150404||GRMZM2G319836||GRMZM2G452739 2 partial identical duplicate:GRMZM2G150404 |assembly errors? Sb02g006290 Os07g10770
cf1 camouflage1 GRMZM2G026117 BT042702 chr5 1 Good Sb04g004630 Os02g07230
chi1 chalcone flavanone isomerase1 GRMZM2G155329 Z22760 chr1 1 Good Sb01g003330 Os03g60509
chn2 chitinase2 GRMZM2G145461 L00973 GRMZM2G145518||GRMZM2G447967 2 Good chr10:59525238-60462013 Os06g51050
chn3 chitinase3 GRMZM2G389582 L16798 chr5 GRMZM2G064360 1 Good chr10:60362013-60952691 Os06g51050
cip1 cytokinin inducible protease1 GRMZM2G009443 T14785 chr10 1 Can't proof chr8:15672577-16127244 no synteny
cka1 CK2 protein kinase alpha 1 GRMZM2G143602 X61387 chr2 2 Good Sb02g001110 Os07g02350
cka2 CK2 protein kinase alpha 2 GRMZM2G047855 Y11526 chr1 1 Good Sb01g007270 Os03g55389
cko1 cytokinin oxidase1 GRMZM2G146644 Y18377 chr3 1 wrong exons in middle of transcript-real ones missing Sb03g003300 Os01g09246
conz1 constans1 GRMZM2G405368 EU098139 chr9 GRMZM2G545607 1 Good Sb10g010050 Os06g16370
cpn1 chaperonin 1 GRMZM2G458208-GRMZM2G111477 L21007 chr5 2 Gene split by Sb01g020010 Os10g32550
cr4 crinkly4 GRMZM2G051637 U67422 chr10 1 Good Sb08g003290 chr12:2558011-3036894
crp1 chloroplast RNA processing1 GRMZM2G083950 AF073522 chr7 1 Good Sb02g035800 Os07g36390
crr2 cytokinin response regulator2 GRMZM2G392101 AB031012 chr10 2 Good Sb06g032600 Os04g57720
crs1 chloroplast RNA splicing1 GRMZM2G078412 AY109620 chr1 1 Good no synteny Os08g27150
crs2 chloroplast RNA splicing2 GRMZM2G132021 AF225708 chr8 2 Good Sb03g007130 Os01g04130
crt2 calreticulin2 GRMZM2G358059 X89813 chr7 1 Good Sb02g007480 Os07g14270
csy1 chloroplast SecY-1 GRMZM5G809546 AF039304 chr10 NA Good no synteny no synteny
cta1 chitinase A1 GRMZM2G051943 M84164 chr2 GRMZM2G051921||GRMZM2G052175||GRMZM2G122708 1 Good Sb06g021230 Os04g41680
cyc1 cyclin1 GRMZM2G034647 U10078 chr8 GRMZM5G804421 2 Good Sb09g024180 Os05g41390
cyc2 cyclin2 chr3:41183262 U10077 chr3 No gene model
cyc3 cyclin3 GRMZM2G073671 U10076 chr6 2 Good Sb10g030790 Os06g51110
cyc4b cyclin4 GRMZM2G310115 U10079 chr8 2 Good Sb03g037470 Os01g59130
cyp1 cytochrome P450 homolog1 GRMZM5G899349 T12664 chr3 2 Can't proof Sb08g002250 no synteny
cyp8 cytochrome P-450 8 GRMZM2G167986 L23209 chr1 GRMZM5G825885 1 Good Sb01g022690 Os10g26340
d3 dwarf plant3 GRMZM2G093195 U32579 chr9 1 Good Sb10g000920 Os06g02019
d8 dwarf plant8 GRMZM2G144744 AY103865 chr1 1 Good Sb01g010660 Os03g49990
d9 dwarf plant9 GRMZM2G024973 DQ903073 chr5 2 Good Sb01g010660 Os03g49990
dbf3 DRE-binding protein3 GRMZM2G124037 AY964718 GRMZM2G124011 2 Good Sb02g030320 Os09g35020
dcd1 discordia1 GRMZM2G083459 FJ469780 chr10 1 Good Sb09g003830 Os05g05710
dek1 defective kernel1 GRMZM2G321753 AY061806 chr1 1 Good Sb01g037910 chr3:10491680-10834228
dgat1 diacyglycerol acyltransferase1 GRMZM2G169089 EU039830 chr6 2 Good Sb10g022270 too big a gap
dhn1 dehydrin1 GRMZM2G079440 X15290 chr6 1 Good Sb09g018420 chr5:17019836-17955366
dlf1 delayed flowering1 GRMZM2G067921 EF093789 chr7 GRMZM5G858064 NA Good no synteny Os09g36910
dmt101 DNA methyl transferase1 GRMZM2G333916 AF229183 chr7 1 Good Sb02g004680 Os07g08500
dof2 DNA binding with one finger2 GRMZM2G009406 X79934 chr2 2 Good Sb02g027480 Os09g29960
dsc1 discolored kernel1 chr4:47715993 AF006498 chr4 Not gene model
du1 dull endosperm1 GRMZM2G141399 AF023159 chr10 1 Good Sb07g005400 Os08g09230
dwf1 DWF1 like1 GRMZM2G057000 AY523572 chr5 GRMZM2G358007 1 Good Sb10g031090 no synteny
dzs18 delta zein structural18 GRMZM2G100018 U31541 chr6 2 Good Sb10g013050 no synteny
ea1 egg apparatus1 GRMZM2G456746 AY733074 chr7 1 Good Sb02g038820 Os07g41400
eif5 eucaryotic translation initiation factor5 GRMZM2G165917 X99517 chr4 GRMZM5G899228 2 Good Sb04g003550 too big a gap
eif5a elongation initiation factor5A GRMZM2G113696 H35879 chr2 2 Can't proof Sb02g038290 Os07g40580
elfa1 elongation factor alpha1 AC233866.1_FG006 M95072 chr6 GRMZM5G859846||GRMZM5G896006 1 Can't proof too big a gap chr5:16888752-17955366
elfg1 elongation factor gamma1 GRMZM2G122871 T14690 chr6 2 Can't proof Sb10g022570 too big a gap
elm1 elongated mesocotyl1 GRMZM5G861678 AY560384 chr8 2 Good Sb03g045760 Os01g72090
emp2 empty pericarp 2 GRMZM2G039155 AF494285 chr2 2 Good Sb02g023500 Os09g20830
emp4 empty pericarp4 GRMZM2G092198 DQ291135 chr1 1 Good Sb01g009420 Os03g51840
eno1 enolase1 GRMZM2G064302 X55981 chr9 1 Good Sb10g002460 Os06g04510
et1 etched1 GRMZM2G157574 AJ507104 chr3 GRMZM5G887575 1 Good Sb03g027210 Os01g42050
expa1 alpha expansin1 GRMZM2G339122 AY104146 chr3 1 Good Sb03g038290 Os01g60770
fdx3 ferredoxin3 GRMZM2G053458 AB001387 chr1 1 Good Sb01g002180 Os03g61960
fea2 fasciated ear2 GRMZM2G104925 AY055124 chr4 2 Good Sb04g025240 Os02g39100
fer1 ferritin1 GRMZM2G325575 X61391 chr4 1 Good Sb05g000530 Os11g01530
fer2 ferritin homolog2 GRMZM2G147266 X61392 GRMZM2G066165||GRMZM5G854762 1 CDS wrong|real gene is annotated as only 3' UTR too big a gap no synteny
fgs1 ferredoxin-dependent glutamate synthase1 GRMZM2G036609 M59190 chr7 1 Good Sb02g041740 Os07g46460
fht1 flavanone 3-hydroxylase1 GRMZM2G062396 U04434 chr2 1 Good Sb06g031790 Os04g56700
fie1 fertilization independent endosperm1 GRMZM2G118205 AY061964 chr4 2 Good Sb07g002820 Os08g04290
fie2 fertilization independent endosperm2 GRMZM2G148924 AY061965 chr10 1 Good Sb07g002820 Os08g04290
fl2 floury2 GRMZM2G397687 L34340 chr4 GRMZM2G397678 1 Good too big a gap too big a gap
fps1 farnesyl pyrophosphate synthase1 GRMZM2G168681 AF330036 chr8 2 Good Sb09g027190 Os05g46580
g2 golden plant2 GRMZM2G087804 AF298118 chr3 GRMZM2G087961 1 Good Sb03g000400 Os01g13740
gdh1 glutamic dehydrogenase1 GRMZM2G178415 AY106054 chr1 1 Good Sb01g005370 Os03g58040
gl1 glossy1 GRMZM2G114642 U37428 chr7 1 Good Sb02g025220 Os09g25850
gl15 glossy15 GRMZM2G160730 U41466 chr9 1 Good|neither transcript completely accurate Sb10g025053 Os06g43220
gl2 glossy2 GRMZM2G098239 AY109951 chr2 GRMZM5G867147 1 Good Sb06g028160 Os04g52164
gl8 glossy8 AC205703.4_FG006 U89509 chr5 1 Good Sb04g025020 Os02g38440
glb1 globulin1 GRMZM2G067919 U28017 chr1 1 Good Sb01g012640 Os03g46100
glb2 globulin2 GRMZM2G026703 X53715 chr1 1 Good Sb01g005440 Os03g57960
gln1 glutamine synthetase1 GRMZM2G098290 X65931 chr10 2 Good Sb06g031460 Os04g56400
gln2 glutamine synthetase2 GRMZM2G024104 X65927 chr1 1 Good Sb01g010270 Os03g50490
gln3 glutamine synthetase3 GRMZM2G046601 X65930 chr9 GRMZM5G887009 2 Good Sb01g042450 Os03g12290
gln4 glutamine synthetase4 GRMZM5G872068 X65928 chr5 1 Good Sb04g028690 Os02g50240
gln5 glutamine synthetase5 GRMZM2G036464 X65929 chr4 2 Good Sb04g028690 Os02g50240
gln6 glutamine synthetase6 GRMZM2G050514 X65926 chr1 1 Good Sb01g042450 Os03g12290
glu1 beta glucosidase1 GRMZM2G016890 U33816 chr10 GRMZM2G014844||GRMZM2G119460 1 Good Sb08g007586 no synteny
glu2 beta-glucosidase2 GRMZM2G008247 U44087 chr10 1 Good no synteny chr12:7256295-7525701
gn1 gnarley1 GRMZM2G452178 AY312168 chr2 2 Good Sb02g002200 Os03g56110
gol1 goliath1 GRMZM2G080079 T18797.1 chr4 2 Can't proof Sb04g028130 Os02g50990
got2 glutamate-oxaloacetate transaminase2 GRMZM5G836910 AY105250 chr5 1 Good Sb04g036060 Os02g55420
gpa1 glyceraldehyde-3-phosphate dehydrogenase1 GRMZM2G337113 X07157 chr2 GRMZM2G337196 1 Good Sb06g018880 Os04g38600
gpc1 glyceraldehyde-3-phosphate dehydrogenase1 GRMZM2G046804 X15596 chr4 2 Good Sb07g002220 Os08g03290
gpc2 glyceraldehyde-3-phosphate dehydrogenase2 GRMZM2G180625 U45858 chr6 1 Good Sb07g002220 Os08g03290
gpc3 glyceraldehyde-3-phosphate dehydrogenase3 GRMZM2G071630 L13431 chr4 GRMZM2G072119 2 Good Sb04g025120 Os02g38920
grf1 general regulatory factor1 GRMZM2G102499 AY110485 chr2 1 Good Sb06g019100 Os04g38870
grp1 glycine-rich protein1 GRMZM2G080603 X61121 chr1 GRMZM5G836166 1 Good too big a gap no synteny
grp3 glycine-rich protein3 GRMZM2G154954 Y07781 chr5 2 Good too big a gap too big a gap
gsr1 glutathione reductase1 GRMZM2G172322 T12723 chr1 1 Good Sb01g046260 Os03g06740
gst1 glutathione-S-transferase1 GRMZM2G116273 X06754 chr8 2 Good Sb03g035420 Os01g55830
gst4 glutathione S-transferase4 GRMZM2G146246 W49853 chr3 GRMZM5G849767 1 Good Sb03g044980 Os01g70770
gzr1 gamma zein modifier1 GRMZM2G138727 S78780 chr7 GRMZM2G438538 1 Good|identical to 27-kDa zein protein Sb02g025510 chr9:15882395-16462627
hcf106 high chlorophyll fluorescence106 GRMZM5G898735 AF027808 chr2 1 Good Sb06g014410 chr4:19032798-19318750
hcf106c high chlorophyll fluorescence106c GRMZM2G151529 AF237945 chr10 GRMZM2G002911||GRMZM2G151566||GRMZM2G484851 2 Good Sb06g014410 chr4:19177617-19798474
hda108 histone deacetylase GRMZM2G136067 AF440226 chr4 2 Good too big a gap no synteny
hir1 hypersensitive induced reaction1 GRMZM2G117755 AF236373 chr4 2 Good Sb07g019760 Os08g30790
his2a1 histone2A1 GRMZM2G305046 U08225 chr9 GRMZM2G305035 2 Good Sb01g039240 Os03g17100
his2b1 histone2b1 GRMZM2G071959 X57312 chr7 1 Good Sb02g025410 chr9:15818244-16396427
his2b2 histone2b2 GRMZM2G119071 X57313 chr4 GRMZM2G553422 2 Good Sb07g022370 chr8:22231845-22466035
hm1 Helminthosporium carbonum susceptibility1 GRMZM5G881887 L02540 chr1 1 Good Sb07g023130 too big a gap
hm2 Helminthosporium carbonum susceptibility2 GRMZM2G086773 AF041047 chr9 1 Good Sb10g025770 Os06g44180
hmg1 high mobility group protein1 GRMZM5G834758 X66077 chr5 1 Good Sb10g030910 Os06g51220
hopi1 hopi r1/b1 family member1 GRMZM5G822829 AJ251719 chr10 2 Good|lc1 Sb06g025060 Os04g47059
hrg1 hydroxyproline rich glycoprotein1 GRMZM2G168651 X63134 chr2 1 Good Sb06g016310 Os04g34170
hsbp1 herbicide safener binding protein1 GRMZM2G085924 AF033496 chr2 GRMZM2G385313||GRMZM2G506270 Good no synteny no synteny
hsk1 high-sulfur keratin homolog1 GRMZM5G844723 T14673 chr9 2 Can't proof chr1:58795354-59707921 chr3:12522642-13228664
hsp1 heat shock protein1 GRMZM2G310431 X03697 chr8 2 Good Sb03g039360 Os01g62290
hsp101 heat-shock protein 101 GRMZM2G360681 AF077337 chr6 1 Good Sb09g025900 Os05g44340
hsp18c heat shock protein18c GRMZM2G034157 X54075 chr8 2 Upstream UTR missing too big a gap too big a gap
hsp18f heat shock protein18f GRMZM2G083810 X54076 chr3 1 Good Sb03g003530 Os01g08860
hsp70-4 heat shock protein70-4 GRMZM2G340251 X78414 chr3 GRMZM5G817178 2 Good Sb08g018750 Os12g38180
hyp1 hybrid proline-rich protein1 GRMZM2G304378 X60432 chr9 GRMZM2G304385 1 Good Sb10g004790 Os06g07220
ibp2 initiator-binding protein2 GRMZM2G110309 X79086 chr1 1 Good Sb01g039650 Os03g16700
id1 indeterminate growth1 GRMZM2G011357 AF058757 chr1 1 Good Sb01g021480 Os10g28330
ig1 indeterminate gametophyte1 GRMZM2G118250 EF081454 chr3 GRMZM2G419929 1 Good Sb03g042310 Os01g66590
igl1 indole-3-glycerol phosphate lyase1 GRMZM2G046191 NM_001111532 chr1 1 Assignment corrected by
ij1 iojap striping1 GRMZM2G004583 Z15063 chr7 1 Good Sb02g028720 Os09g32030
im30p1 IM30 protein homolog1 GRMZM2G017077 T12745 chr3 1 Can't proof Sb03g042550 Os01g67000
in1 intensifier1 GRMZM2G042733 U57899 chr7 1 Good Sb02g006390 Os07g11020
incw1 cell wall invertase1 GRMZM2G139300 U17695 chr5 1 Good Sb04g021810 Os02g33110
incw3 invertase cell wall3 GRMZM2G123633 AF043346 chr10 GRMZM2G095725 2 Good too big a gap Os04g33740
isr1 inhibitor of striate1 GRMZM5G803874 AF296824 chr10 2 Good Sb06g025010 Os04g47020
ivr1 invertase1 GRMZM2G394450 U16123 chr2 1 Good Sb06g023760 Os04g45290
ivr2 invertase2 GRMZM2G089836 AJ563384 chr5 GRMZM5G863665||GRMZM5G890000 1 Good Sb04g000620 Os02g01590
kan1 KANADI1 GRMZM2G056400 EU935003 chr1 1 Good Sb07g020820 Os08g33050
kan3 kanadi3 GRMZM2G175827 EU925399 chr4 2 Good Sb07g020820 Os08g33050
kch2 potassium channel2 AC234152.1_FG007-AC234152.1_FG002 AJ132686 chr8 2 Gene split by Sb09g021210 chr5:20322584-21033855
kch3 potassium channel3 GRMZM2G081666 AY461584 chr4 2 Good Sb04g008780 Os02g14840
kip1 knotted interacting protein1 GRMZM2G163761 AY082396 chr1 GRMZM2G011588 1 Good Sb01g011970 Os03g47730
kn1 knotted1 GRMZM2G017087 X61308 chr1 1 Missing 5' UTR Sb01g009480 Os03g51690
knox3 knotted related homeobox3 GRMZM2G000743 DQ056238 chr1 1 Can't proof Sb01g009480 Os03g51710
lc1 red leaf color1 GRMZM5G822829 M26227 chr10 2 Good|lc1 Sb06g025060 Os04g47059
lec1 leafy cotyledon GRMZM2G011789 AF410176 chr5 1 Good Sb04g029350 Os02g49370
lem1 lethal embryo mutant1 AC234157.1_FG002 AF332374 chr1 1 Good Sb01g006910 Os03g55930
les22 lesion22 GRMZM2G044074 AF058763 chr1 1 Good Sb01g036030 Os03g22060
lg1 liguleless1 GRMZM2G036297 AF451895 chr2 1 Good|upstream sequence on wrong contig Sb06g031290 Os04g56170
lg2 liguleless2 GRMZM2G060216 AY180106 chr3 1 Good Sb03g040530 Os01g64020
lg3 liguleless3 GRMZM2G087741 AF100455 chr3 1 Good Sb03g012480 Os01g19694
lg4 liguleless4 GRMZM2G094241 AF457118 chr8 2 Good Sb09g002520 Os05g03884
lhcb1 light harvesting chlorophyll a/b binding protein1 GRMZM2G351977 M87020 chr8 2 Can't proof too big a gap Os01g41710
lhcb2 light harvesting chlorophyll a/b binding protein2 AC207722.2_FG009 X14794 chr7 GRMZM2G353753 1 Good Sb02g032040 no synteny
lhcb3 light harvesting chlorophyll a/b binding protein3 GRMZM2G155216 X55892 chr8 2 Good Sb09g028720 chr5:28058352-28684191
lhcb7 light harvesting complex mesophyll7 GRMZM2G402936 X53398 chr6 1 Good Sb09g028720 chr5:28081764-28748003
lhcb9 light harvesting chlorophyll binding protein9 GRMZM2G018627 X68682 chr1 GRMZM2G321320||GRMZM2G414192||GRMZM2G414195 1 Good|near identical paralog: GRMZM2G414192 Sb01g015400 Os03g39610
lkrsdh1 lysine-ketoglutarate reductase /
saccharopine dehydrogenase1
GRMZM2G181362 AF271636 chr4 2 Good Sb04g035220 Os02g54254
lls1 lethal leaf spot1 GRMZM2G339563 U77345 chr1 1 Good Sb01g047120 Os03g05310
lop1 lo1 pI allergen homolog1 GRMZM2G072886 AY197352 chr9 2 Good Sb01g029880 Os10g40090
lox1 lipoxygenase1 GRMZM2G156861 DQ335760 chr3 GRMZM2G458554 1 Two tandem duplicates merged into one gene by Sb03g042440 chr1:38780116-39263267
lox3 lipoxygenase3 GRMZM2G109130 AF465643 chr1 1 Good Sb01g011040 Os03g49260
lpa1 low phytic acid1 GRMZM2G155242 AF323175 chr1 1 Good Sb01g044290 Os03g09250
lpa2 low phytic acid2 GRMZM2G456626 AY172635 chr1 1 Good Sb01g028090 Os10g42550
lyce1 lycopene epsilon cyclase1 GRMZM2G012966 EU924262 chr8 2 Good Sb03g026020 Os01g39960
mads1 MADS1 GRMZM2G171365 AF112148 chr9 2 Good Sb01g049020 Os03g03100
mbf1 multi-protein bridging factor homolog1 GRMZM2G101480 T14752 chr4 2 Good Sb07g014940 no synteny
mdh2 malate dehydrogenase2 GRMZM2G154595 AY103861 chr6 1 Good Sb09g029240 Os05g49880
mdh4 malate dehydrogenase4 GRMZM2G415359 AA051891 chr1 1 Can't proof Sb01g019280 Os10g33800
me3 NADP malic enzyme3 GRMZM2G085019 J05130 chr3 1 Good Sb03g003220 Os01g09320
meg1 maternally expressed gene1 GRMZM2G354335 AY536120 chr7 GRMZM2G116212||GRMZM2G137959||GRMZM2G145466||GRMZM2G175896||GRMZM2G175912||GRMZM2G181051||GRMZM2G573952||GRMZM2G573956 1 adds to extra exons too big a gap chr7:4506584-4989949
mez1 enhancer of zeste1 GRMZM2G157820 AF443596 chr6 2 Good Sb10g004560 too big a gap
mgs1 male-gametophyte specific1 GRMZM2G317406 S44171 chr10 2 weird Sb06g014740 Os04g32680
mha1 membrane H(+)-ATPase1 GRMZM2G104325 U08985 chr7 1 Good Sb02g005440 Os07g09340
mha2 plasma-membrane H+ATPase2 GRMZM2G019404 X85805 chr2 GRMZM2G314079 1 Good Sb06g031240 Os04g56160
mir1 maize insect resistance1 GRMZM2G150276 AF019145 chr6 GRMZM2G150256 2 Good Sb10g027980 chr6:28229592-28756822
mlg3 lea protein group3 GRMZM2G096475 U05226 chr6 1 Good Sb09g027110 Os05g46480
mn1 miniature seed1 GRMZM2G119689 AF050631 chr2 1 Good|probably too big a gap Os04g33740
mop1 mediator of paramutation1 GRMZM2G042443 DQ417755 chr2 GRMZM2G042532 1 Can't proof Sb06g019330 Os04g39160
mrp1 Myb related protein1 GRMZM2G111306 AJ318518 chr8 2 Good too big a gap chr5:1836622-2596437
mrpa3 multidrug resistance-associated protein3 GRMZM2G111903 AY609318 chr9 1 Good Sb10g004070 Os06g06440
ms26 male sterile26 GRMZM2G091822 AF366297 chr1 1 Good Sb01g045960 Os03g07250
ms45 male sterile45 GRMZM2G307906 AF360356 chr9 2 CDS wrong Sb01g040250 Os03g15700
mta1 ribosomal protein GRMZM2G090422 T14712 chr1 1 Can't proof Sb01g007690 Os03g54860
mwp1 milkweed pod1 GRMZM2G082264 EU925398 chr7 1 Good Sb02g024110 Os09g23200
myb2 myb2 AC203535.4_FG001 AF458962 chr3 GRMZM5G826686||GRMZM5G882384 1 Good Sb03g044450 chr1:40516492-40965296
nac1 NaCl stress protein1 GRMZM2G015605 T14760 chr10 1 Good Sb09g003060 Os05g04700
nbp1 nucleic acid binding protein1 GRMZM2G011129 M74566 chr7 1 Good Sb02g011330 no synteny
ndk1 nucleotide diphosphate kinase1 GRMZM2G134797 T18831 chr7 1 Can't proof Sb02g033710 Os07g30970
nnr1 nitrate reductase(NADH)1 GRMZM2G568636 M77792 chr4 2 Good Sb07g022750 Os08g36480
ns1 narrow sheath1 GRMZM2G069028 AJ536578 chr2 2 Good Sb05g003490 no synteny
o2 opaque endosperm2 GRMZM2G015534 X15544 chr7 1 Good Sb02g004590 Os07g08420
ocl1 outer cell layer1 GRMZM2G026643 Y17898 chr3 1 Good Sb03g008090 no synteny
ocl2 outer cell layer2 AC235534.1_FG007 AJ250984 chr10 2 Good Sb06g025750 Os04g48070
ocl3 outer cell layer3 GRMZM2G116658 AJ250985 chr7 1 Good Sb02g030470 Os09g35760
ocl4 outer cell layer4 GRMZM2G123140 AJ250986 chr1 GRMZM5G875327 1 Good Sb01g028160 Os10g42490
ocl5a outer cell layer5a GRMZM2G130442 AJ250987 chr4 2 Good Sb07g005180 Os08g08820
ohp1 opaque2 heterodimerizing protein1 GRMZM2G016150 L00623 chr1 GRMZM2G019446 1 Good Sb01g005170 Os03g58250
ohp2 opaque2 heterodimerizing protein2 GRMZM2G007063 L06478 chr5 2 Good Sb01g005170 Os03g58250
ole1 oleosin1 GRMZM2G337229 U13701 chr2 1 Good Sb06g024350 Os04g46200
ole3 oleosin3 AC206941.2_FG002 J05212 chr5 2 3' UTR split into separate gene model Sb01g011120 Os03g49190
orp1 orange pericarp1 GRMZM2G169593 M76684 chr4 GRMZM5G896346 2 Good Sb07g002770 Os08g04180
orp2 orange pericarp2 GRMZM2G005024 M76685 chr10 1 Split into two transcripts? Sb07g002770 Os08g04180
oy1 oil yellow1 GRMZM2G419806 DQ084025 chr10 1 Good Sb08g004300 chr12:3388067-4083733
p1 pericarp color1 GRMZM2G084799 U57002 chr1 1 3' UTR missing Sb01g037670 Os03g19120
p2 pericarp color2 GRMZM2G057027 AF210617 chr1 1 duplicate of P1 Sb01g037690 Os03g19120
pac1 pale aleurone color1 GRMZM2G058292 AY115485 chr5 GRMZM5G872691 1 Good| includes more 5' UTR Sb04g031730 Os02g45810
pal1 phenylalanine ammonia lyase homolog1 GRMZM2G074604 M95077 chr5 GRMZM2G029048||GRMZM2G170692||GRMZM2G334655||GRMZM2G334660 1 Can't proof Sb04g026530 Os02g41680
pcna1 proliferating cell nuclear antigen1 GRMZM2G030523 X79065 chr5 1 Good Sb04g036440 Os02g56130
pdc2 pyruvate decarboxylase2 GRMZM2G038821 D14456 chr8 2 Good Sb03g005240 Os01g06660
pdc3 pyruvate decarboxylase3 GRMZM2G087186 D14457 chr1 GRMZM5G841025 1 Good Sb01g038360 Os03g18220
pdi1 protein disulfide isomerase1 GRMZM2G091481 AY739284 chr4 GRMZM2G393320 1 Good Sb05g006150 Os11g09280
pep1 phosphoenolpyruvate carboxylase1 GRMZM2G083841 X15238 chr9 1 Good Sb10g021330 chr6:19969223-20504683
pep4 phosphoenolpyruvate carboxylase4 GRMZM2G473001 X61489 chr7 1 Good Sb02g021090 Os09g14670
pex1 pollen extensin-like1 GRMZM5G841015 Z34465 chr2 GRMZM2G453012 2 Good too big a gap no synteny
pgd2 6-phosphogluconate dehydrogenase2 GRMZM2G145715 AF061837 chr3 1 Good Sb03g045216 chr1:41194784-41479544
pgl2 polygalacturonase2 GRMZM2G320175 X57628 chr6 GRMZM2G058033||GRMZM2G153666||GRMZM2G160526||GRMZM2G160626||GRMZM2G162384||GRMZM2G306693||GRMZM5G880653 2 Good Sb10g024010 Os06g40890
pgl8 exopolygalacturonase8 GRMZM2G394259 X64408 chr6 2 Good Sb10g024010 Os06g40890
phot1 blue-light receptor phototropin 1 GRMZM2G001457 AF033263 chr3 2 Good Sb08g000260 Os11g01140
phyA1 phytochromeA1 GRMZM2G157727 AY234826 chr1 GRMZM5G895731 1 Good Sb01g009920 Os03g51030
phyB1 phytochromeB1 GRMZM2G124532 DQ307579 chr1 1 CDS starts too late (insertion into B73 exon?) Sb01g037340 Os03g19590
phyB2 phytochromeB2 GRMZM2G092174 AY234828 chr9 2 Good Sb01g037340 Os03g19590
phyC1 phytochromeC1 GRMZM2G057935 AY234829 chr1 GRMZM2G357074 1 Good Sb01g007850 Os03g54084
phyC2 phytochromeC2 GRMZM2G129889 AY234830 chr5 2 Good Sb01g007850 Os03g54084
piip1 physical impedance induced protein1 AC234161.1_FG001 AF001634 chr9 AC234161.1_FG002 2 Good Sb01g029630 Os10g40420
pip1b plasma membrane intrinsic protein1 AC209208.3_FG002 AF131201 chr5 1 skips 3' UTR Sb04g032430 Os02g44630
pip1c plasma membrane intrinsic protein1 GRMZM2G392975 AF326487 chr4 2 Good Sb04g032430 Os02g44630
pip1e plasma membrane intrinsic protein1 GRMZM2G081843 AF326489 chr4 2 Good Sb04g037800 Os02g57720
pip1f plasma membrane intrinsic protein1 GRMZM2G136032 AF326490 chr9 1 Good Sb10g007610 chr6:5814961-6206831
pip2a plasma membrane intrinsic protein2 GRMZM2G178693 AF130975 chr2 1 Good Sb06g023240 Os04g44570
pip2b plasma membrane intrinsic protein2 GRMZM2G092125 AF326492 chr2 2 Good Sb02g010760 too big a gap
pip2c plasma membrane intrinsic protein2 GRMZM2G081192 AF326493 chr4 GRMZM2G081333 2 Good Sb04g026650 Os02g41860
pip2d plasma membrane intrinsic protein2 GRMZM2G154628 AF326494 chr5 1 Good Sb04g032430 Os02g44630
pip2e plasma membrane intrinsic protein2 GRMZM2G014914 AF326491 chr7 GRMZM2G047368 1 Good Sb02g010760 too big a gap
pip2f plasma membrane intrinsic protein2 GRMZM2G047368 AF326495 chr7 1 Good too big a gap too big a gap
pk4 protein kinase4 GRMZM2G014833 AF141378 chr3 1 Good Sb03g035170 Os01g55450
pki1 protein kinase inhibitor1 GRMZM2G018728 Z29643 chr1 1 Good Sb01g036830 Os03g20630
pl1 purple plant1 GRMZM2G701063 AF015268 chr6 2 Good Sb10g006700 Os06g10350
plt1 phospholipid transfer protein homolog1 GRMZM2G101958 J04176 chr10 1 Good Sb08g002670 no synteny
plt2 phospholipid transfer protein homolog2 GRMZM2G010868 U66105 chr3 2 Good Sb08g002670 Os11g02424
pmg1 phosphoglycerate mutase1 GRMZM5G833389 Z33612 chr8 2 Good Sb03g038020 Os01g60190
ppp1 pyrophosphate-energized proton pump1 GRMZM2G090718 T18800 chr5 1 3' end half of gene sequence missing Sb04g034340 Os02g52940
ppr5 pentatricopeptide repeat 5 GRMZM2G025409 EU037901 chr4 2 Good Sb04g027800 Os02g51480
prc1 proteasome C9 1 GRMZM2G120047 T14766 chr6 2 Can't proof Sb10g004740 Os06g07140
prf1 profilin homolog1 GRMZM2G074361 X73279 chr6 1 Good Sb09g026120 chr5:25962071-26565743
prh1 ser/thr protein phosphatase1 GRMZM2G112240 M60215 chr4 2 Good Sb04g037500 Os02g57450
prp1 pathogenesis-related protein1 AC205274.3_FG001 X54325 chr8 UTRs unannotated no synteny no synteny
prp2 pathogenesis-related protein2 GRMZM2G102356 T18697 chr2 GRMZM5G809105 1 Good Sb06g019320 Os04g39150
ps1 pink scutellum1 GRMZM5G849107 AY206862 chr5 GRMZM2G403196 1 Good Sb04g006120 Os02g09750
psei1 cystatin1 GRMZM2G438551 AM055630 chr3 GRMZM5G858738 1 Good Sb03g037370 Os01g58890
psei2 cystatin2 GRMZM2G012160 D63342 chr8 2 Good Sb03g037370 Os01g58890
ptk1 protein kinase1 GRMZM2G328785 X52384 chr6 GRMZM2G328772 1 Good Sb09g008070 no synteny
qm1 QM1 homolog1 GRMZM2G087233 U06108 chr5 2 Good Sb01g015470 no synteny
r1 colored1 GRMZM5G822829 X15806 chr10 2 Good||lc1 Sb06g025060 Os04g47059
ra1 ramosa1 GRMZM2G003927 AY957396 chr7 1 Good Sb02g024400 chr9:14417584-14918349
ra2 ramosa2 AC233943.1_FG002 BT035538 chr3 1 UTR exon skipped my Sb03g004590 Os01g07480
ra3 ramosa3 GRMZM2G014729 DQ436920 chr7 1 Good Sb02g039820 Os07g43160
rab15 responsive to abscisic acid15 GRMZM2G165901 X12564 chr5 GRMZM2G166026 2 Good Sb01g012300 Os03g46770
rbap1 WD-repeat protein RBAP1 GRMZM2G316113 AF250047 chr8 2 Good Sb03g032630 Os01g51300
rel2 ramosa1 enhancer locus2 GRMZM2G042992 GQ927145 chr10 1 Good Sb07g004180 Os08g06480
rf2 restorer of fertility2 GRMZM2G058675 U43082 chr9 1 Good Sb10g009790 Os06g15990
rgd1 ragged seedling1 GRMZM2G020187 DQ832257 chr6 Good no synteny no synteny
ris2 iron-sulfur protein2 GRMZM2G162748 W49887 GRMZM2G162805 1 Can't proof chr4:10212873-10952629 Os02g15560
rld1 rolled leaf1 GRMZM2G109987 AY501430 chr9 2 Good Sb01g050000 Os03g01890
rmr1 required to maintain repression1 GRMZM2G154946 EU155001 chr6 GRMZM2G453655 1 Good Sb09g019410 Os05g32610
rnc1 ribonuclease III domain protein1 GRMZM2G035820 EU971053 chr3 1 Good Sb03g037610 Os01g59510
rop2 Rho-related protein from plants2 GRMZM5G846811 AY163379 chr4 2 Good Sb04g001690 Os02g02840
rp1 resistance to Puccinia sorghi1 AC152495.1_FG002 AF107293 chr10 AC152495.1_FG003||GRMZM2G003625||GRMZM2G005134||GRMZM2G061742||GRMZM2G069382||GRMZM2G083246||GRMZM2G083258||GRMZM2G165720||GRMZM5G833046 1 5' and 3' UTR exons missed by Sb08g002410 no synteny
rpl17 ribosomal protein L17 GRMZM2G702426 AF034948 chr4 2 Good Sb07g026305 Os08g41810
rpot1 RNA polymerase T phage-like 1 GRMZM2G381395 AF127021 chr7 1 Good Sb02g039520 chr7:25585675-26175382
rps11 ribosomal protein S11 GRMZM2G019325 X55967 chr10 2 Good Sb06g028330 Os04g52354
rps4 ribosomal protein S4 GRMZM2G035017 AF015522 chr1 1 Good Sb01g001850 chr3:35199453-35652824
rrb1 related to retinoblastoma1 GRMZM2G003043 AF007793 chr2 2 Good Sb05g020280 Os11g32900
rs1 rough sheath1 GRMZM2G028041 L44133 chr7 1 Good Sb02g002200 Os07g03770
rs2 rough sheath2 GRMZM2G403620 AF143447 chr1 1 Good Sb08g018840 Os12g38400
rtcs1 rootless concerning crown and seminal roots1 GRMZM2G092542 EF051732 chr1 GRMZM2G092483 1 Good Sb01g046990 Os03g05510
rth1 roothair defective1 GRMZM2G099056 AY265854 chr1 1 Good Sb01g014290 Os03g42750
rth3 roothair defective3 GRMZM2G377215 AY265855 chr1 1 Good Sb01g037850 Os03g18910
rtp1 Zea root preferential4 GRMZM2G017557 L14063 chr4 1 Good Sb05g006910 too big a gap
sal1 supernumerary aleurone1 GRMZM2G117935 AY243475 chr9 1 Good Sb10g025200 Os06g43590
sam2 S-adenosyl methionine decarboxylase2 GRMZM2G154397 W99255 chr2 1 Can't proof Sb06g021540 Os04g42090
sar1 SAR homolog1 GRMZM2G038356 T14655 chr3 1 Good Sb03g013550 Os01g23620
sbe1 starch branching enzyme1 GRMZM2G088753 D11081 chr5 1 Good Sb10g030776 Os06g51084
sbe3 starch branching enzyme3 GRMZM2G073054 U65948 chr2 1 Good Sb06g015360 Os04g33460
sci1 subtilisin-chymotrypsin inhibitor homolog1 GRMZM2G028393 X69972 chr8 GRMZM2G028656||GRMZM2G042789 2 Good too big a gap too big a gap
scm1 self-colored marbled1 GRMZM5G822829 AF135458 chr10 2 can't proof|lc1 Sb06g025060 Os04g47059
sdh1 sorbitol dehydrogenase homolog1 GRMZM2G175423 DQ191049 chr1 1 Good Sb07g025220 Os08g43190
sgo1 shugoshin centromeric cohesion1 GRMZM2G074082 AY964185 chr7 1 Good Sb02g006220 too big a gap
sh1 shrunken1 GRMZM2G089713 X02400 chr9 GRMZM2G090962||GRMZM2G090974 1 Extra 5' UTR in Sb10g006330 Os06g09450
sh2 shrunken2 GRMZM2G429899 M81603 chr3 1 extra (coding)exons in Sb03g028850 Os01g44220
si1 silky1 GRMZM2G139073 AF181479 chr6 2 Good Sb10g029810 Os06g49840
Smh1 Single Myb Histone1 GRMZM2G136887 AY271659 chr8 2 Good Sb03g026470 Os01g40670
Smh2 Single Myb Histone2 GRMZM2G087817 chr3 1 No GenBank Record|personal communication Sb03g026470 Os01g40670
Smh3 Single Myb Histone3 GRMZM2G023667 AY280629 chr8 2 Good Sb03g032540 Os01g51170
Smh4 Single Myb Histone4 GRMZM2G108424 AY280631 chr3 1 Good Sb03g032530 Os01g51154
Smh5 Single Myb Histone5 GRMZM2G163291 AY280630 chr3 1 Good Sb03g005080 chr1:2844116-3337953
Smh6 Single Myb Histone6 GRMZM2G095239 AY280632 chr5 2 Good Sb01g013670 no synteny
sn1 scutellar node color1 GRMZM5G822829 X60706 chr10 2 Good|lc1 Sb06g025060 Os04g47059
sod2 superoxide dismutase2 GRMZM2G025992 M54936 chr7 GRMZM2G027777 1 Good Sb02g042170 Os07g46990
sod3 superoxide dismutase3 GRMZM2G059991 M33119 chr6 1 Good too big a gap Os05g25850
sod4 superoxide dismutase4 GRMZM2G169890 X17565 chr1 1 Good Sb01g035350 Os03g22810
sod9 superoxide dismutase9 GRMZM2G058522 X17564 chr9 2 Good Sb01g035350 Os03g22810
spi1 sparse inflorescence1 GRMZM2G025222 EU910940 chr3 NA 5' end of CDS lost in gap no synteny no synteny
spp1 sucrose-phosphatase1 GRMZM2G055489 AF283564 chr8 2 Good chr9:52109989-52638612 chr5:22388038-22888762
sps1 sucrose phosphate synthase1 GRMZM5G875238 M97550 chr8 2 Good Sb03g043900 Os01g69030
ss1 starch synthase I GRMZM2G129451 AF036891 chr9 1 Good Sb10g004160 Os06g06560
ssu1 ribulose bisphosphate carboxylase small subunit1 GRMZM2G098520 X06535 chr4 1 Good Sb05g003480 too big a gap
ssu2 ribulose bisphosphate carboxylase small subunit2 GRMZM2G113033 Y09214 chr2 2 Good Sb05g003480 no synteny
stc1 sesquiterpene cyclase1 GRMZM2G177098 AF296122 chr9 GRMZM2G177211 1 Good Sb10g006160 chr6:4114082-4703565
stk1 serine threonine kinase1 GRMZM2G165433 EF523347 chr9 GRMZM2G465296 1 Good Sb10g006130 Os06g09230
stp1 sugar transport1 GRMZM2G097768 T12737 chr8 2 Can't proof Sb09g029520 Os05g50280
su1 sugary1 GRMZM2G138060 U18908 chr4 2 Missing 5' coding region? Sb07g027200 Os08g40930
su2 sugary2 GRMZM2G348551 AY499410 chr6 2 5' UTR and upsteam sequence missing Sb10g008200 Os06g12450
Sun1 sad1-unc84-like 1 CCSD type GRMZM2G109818 EU964563 chr5 1 personal communication Sb04g005160 chr2:4152195-4473675
Sun2 sad1-unc84-like 2 CCSD type GRMZM2G440614 BT055722 chr3 1 personal communication Sb03g010590 Os01g16220
Sun4 sad1-unc84-like 4 PM3 type GRMZM2G005483 GU453173 chr8 2 personal communication Sb03g041510 Os01g65520
Sun5 sad1-unc84-like 5 PM3 type AC194341.4_FG003 EU953247 chr8 2 personal communication Sb03g026980 Os01g41600
sus1 sucrose synthase1 GRMZM2G152908 L33244 chr9 2 Good Sb01g033060 Os03g28330
sxd1 sucrose export defective1 GRMZM2G009785 AF302187 chr5 1 Good Sb04g010660 Os02g17650
tacs1 Terminal Acidic SANT 1 GRMZM2G111906 AY738116 chr6 2 Good chr10:59803993-60610533 chr6:30308446-31043218
taf1 transcription associated factor1 GRMZM2G002276 T12672 chr3 1 Can't proof Sb03g039720 Os01g62820
tan1 tangled1 GRMZM2G039113 AF305892 chr6 1 Good Sb09g018850 chr5:18275913-19077686
tb1 teosinte branched1 AC233950.1_FG002 U94494 chr1 1 Good Sb01g010690 Os03g49880
tbp2 TATA-binding protein2 GRMZM2G161418 L13302 chr5 2 Good Sb01g012880 Os03g45410
tdy1 tie-dyed1 GRMZM2G321778 FJ376984 chr6 1 Good Sb09g029660 Os05g50470
te1 terminal ear1 GRMZM2G085113 AF047852 chr3 1 Good Sb03g043230 Os01g68000
tga1 teosinte glume architecture1 GRMZM2G101511 AY883559 chr4 AC233751.1_FG002 2 Good Sb07g026220 Os08g41940
tha1 thylakoid assembly1 chr3:58008644 U71123 chr3 No gene model
tif1 translation initiation factor1 GRMZM5G835323 AF034944 chr7 1 Good Sb02g035170 Os07g34589
tif5A eukaryotic translation initiation factor 5A GRMZM2G144030 AF034943 chr7 1 Good Sb02g038290 Os07g40580
tlk1 tousled-like protein kinase1 GRMZM2G016671 AY644701 chr1 1 Good Sb01g008020 Os03g53880
tlk2 tousled-like protein kinase2 GRMZM2G172132 AF012889 chr5 2 Can't proof Sb01g008020 Os03g53880
tm20 transmembrane protein20 GRMZM2G036564 X97570 chr6 GRMZM2G313761 2 Good Sb10g010780 no synteny
tpi4 triose phosphate isomerase4 GRMZM2G018177 L00371 chr8 2 Good Sb03g006130 Os01g05490
trh1 thioredoxin h homolog1 GRMZM2G424053 T15273 chr6 1 Good Sb09g024960 chr5:25057494-25544351
ts1 tassel seed1 GRMZM2G104843 FJ360855 chr2 1 Good Sb06g018040 Os04g37430
ts2 tassel seed2 GRMZM2G455809 L20621 chr1 1 Good Sb01g038050 Os03g18740
ts4 tasselseed4 GRMZM5G803935 GQ905588 chr3 1 why does a microRNA have a CDS? chr3:73688749-74313024 chr1:42689358-43324564
ts6 tasselseed6 GRMZM5G862109 AF048900 chr1 GRMZM5G880027 1 Good Sb01g003400 Os03g60430
tsh1 tasselsheath1 GRMZM2G325850 chr6 1 No GenBank Record|gene name in publication Sb09g029510 Os05g50270
tua1 alpha tubulin1 AC195340.3_FG001 X63176 chr5 2 Good Sb01g006710 Os03g56810
tua4 alpha tubulin4 GRMZM2G152466 X73980 chr5 2 Good Sb01g009560 Os03g51600
tua5 alpha tubulin5 GRMZM2G099167 X63177 chr2 GRMZM2G333258 2 Good Sb02g037260 Os07g38730
tua6 alpha tubulin6 GRMZM2G083243 X63178 chr7 GRMZM2G083590 1 Good Sb02g037260 Os07g38730
tub1 beta tubulin1 GRMZM2G164696 X52878 chr1 1 Good Sb01g050310 Os03g01530
tub2 beta tubulin2 GRMZM2G334899 X52879 chr8 2 Good Sb09g020360 Os05g34170
tub3 beta tubulin3 GRMZM2G108766 X74654 chr1 1 Good Sb01g012740 Os03g45920
tub4 beta tubulin4 GRMZM2G066191 X74655 chr5 2 Good Sb01g012740 Os03g45920
tub6 beta tubulin6 GRMZM2G071790 L10633 chr3 GRMZM5G857152 1 Good Sb03g037490 Os01g59150
ubi2 ubiquitin2 GRMZM2G419891 S94466 chr4 GRMZM2G118637||GRMZM2G419844 2 Good Sb04g004260 Os02g06640
uce1 ubiquitin conjugating enzyme1 GRMZM2G018447 T18767 chr3 2 Good Sb08g022990 Os12g44000
ugp1 UDP-glucose pyrophosphorylase1 GRMZM2G032003 T14797 chr7 1 Can't proof Sb02g032250 Os09g38030
vacs1 vacuolar sorting receptor homolog1 GRMZM2G067546 AY105262 chr9 2 Good Sb01g036170 Os03g21720
vp1 viviparous1 GRMZM2G133398 M60214 chr3 1 Good Sb03g043480 Os01g68370
vp10 viviparous10 GRMZM2G067176 DQ231522 chr10 2 Good Sb06g031680 Os04g56620
vp14 viviparous14 GRMZM2G014392 U95953 chr1 1 Good Sb01g013520 Os03g44380
vp15 viviparous15 GRMZM2G121468 DQ273133 chr5 GRMZM2G421883 1 Good Sb04g022920 Os02g35200
vp5 viviparous5 GRMZM2G410515 AF039585 chr1 1 Can't proof Sb01g044990 Os03g08570
vp8 viviparous8 GRMZM2G010353 EU401893 chr1 1 Good Sb01g005710 Os03g57660
vpp1 vacuolar proton pump homolog1 GRMZM2G014240 AY103622 chr9 1 Good Sb10g005250 Os06g08080
wc1 white cap1 GRMZM2G057243 DQ100346 chr9 2 Good Sb01g047540 too big a gap
whp1 white pollen1 GRMZM2G151227 X60204 chr2 GRMZM2G027130||GRMZM5G818346 2 Good too big a gap Os11g32540
why1 whirly1 GRMZM2G155662 EU595664 chr6 2 Good Sb10g003170 no synteny
wip1 wound induced protein1 GRMZM2G156632 X71396 chr8 2 Good Sb03g007180 Os01g04050
wtf1 what's this factor?1 GRMZM2G403797 FJ264201 chr8 2 Good Sb09g029040 Os05g49610
wx1 waxy1 GRMZM2G024993 X03935 chr9 1 Good Sb10g002140 Os06g04200
xyl1 xylanase1 GRMZM2G170839 AF063865 chr1 Good no synteny no synteny
yab10 yabby homolog10 GRMZM2G167824 AY313904 chr1 1 Good Sb01g017560 Os10g36420
yab14 yabby14 GRMZM2G005353 AY313901 chr10 2 Good Sb06g023770 Os04g45330
yab15 yabby15 GRMZM2G529859 AY313902 chr5 1 Good Sb04g033590 Os02g42950
yab9 yabby9 GRMZM2G074543 AY313903 chr5 2 Good Sb01g017560 Os10g36420
ypt1 ypt homolog1 GRMZM2G086971 X63277 chr2 1 Good Sb06g017640 chr4:21509416-21975014
ys1 yellow stripe1 GRMZM2G156599 AF186234 chr5 1 Good Sb04g033345 Os02g43370
yy1 yin-yang1 GRMZM2G140016 AF142322 chr4 2 Good Sb04g022470 Os02g34680
zag1 Zea AGAMOUS homolog1 GRMZM2G052890 L18924 chr6 GRMZM2G052937 1 Good Sb09g006360 Os05g11414
zag2 Zea AGAMOUS homolog2 GRMZM2G160687 L18925 chr3 2 Good Sb08g006460 Os12g10540
zag4 zea agamous4 GRMZM2G531231 L46399 chr9 1 weird gene model Sb10g004390 Os06g06750
zag5 zea agamous5 GRMZM2G003514 L46398 chr4 2 Good Sb04g031750 Os02g45770
zap1 zea apetala homolog1 GRMZM2G148693 chr2 2 Assignment corrected by
zcn1 phosphatidylethanolamine-binding protein1 GRMZM2G092008 EU241917 chr3 2 Good Sb08g003210 Os12g05590
zcn10 phosphatidylethanolamine-binding protein10 GRMZM2G152689 EU241926 chr3 1 Good Sb03g008270 Os01g02120
zcn11 phosphatidylethanolamine-binding protein11 GRMZM2G117057 EU241927 chr6 2 Good Sb10g013070 no synteny
zcn12 phosphatidylethanolamine-binding protein12 GRMZM2G103666 EU241928 chr3 1 Good Sb03g034580 Os01g54490
zcn13 phosphatidylethanolamine-binding protein13 GRMZM2G108016 EU241904 chr5 1 Good Sb04g008320 Os02g13830
zcn14 phosphatidylethanolamine-binding protein14 GRMZM2G373928 EU241929 chr8 2 Maybe annotated as pseudogene? Sb03g001700 Os01g11940
zcn15 phosphatidylethanolamine-binding protein15 GRMZM2G051338 EU241930 chr6 2 5' UTR unannotated by Sb10g003940 Os06g06320
zcn16 phosphatidylethanolamine-binding protein16 GRMZM2G127121 EU241931 chr5 1 Good Sb04g025210 Os02g39064
zcn17 phosphatidylethanolamine-binding protein17 GRMZM2G075215 EU241932 chr2 NA Good no synteny no synteny
zcn18 phosphatidylethanolamine-binding protein18 GRMZM2G158809 EU241933 chr2 2 Good Sb02g029725 Os09g33850
zcn19 phosphatidylethanolamine-binding protein19 GRMZM2G062052 EU241934 chr10 2 Good Sb06g020850 Os04g41130
zcn2 phosphatidylethanolamine-binding protein2 GRMZM2G156079 EU241893 chr4 2 Good too big a gap no synteny
zcn20 phosphatidylethanolamine-binding protein20 AC214791.2_FG002 EU241935 chr10 1 3' UTR unannotated Sb08g008180 no synteny
zcn3 phosphatidylethanolamine-binding protein3 GRMZM2G338454 EU241919 chr10 1 5' end of gene lost in a gap Sb08g003210 Os12g05590
zcn4 phosphatidylethanolamine-binding protein4 GRMZM2G075081 EU241920 chr2 1 Good Sb06g015490 Os04g33570
zcn5 phosphatidylethanolamine-binding protein5 AC217051.3_FG006 EU241921 chr10 2 Good Sb06g015490 Os04g33570
zcn6 phosphatidylethanolamine-binding protein6 GRMZM2G132880 EU241922 chr4 1 Good Sb05g003200 Os11g05470
zcn7 phosphatidylethanolamine-binding protein7 GRMZM2G141756 EU241923 chr6 1 Good Sb09g025760 Os05g44180
zcn8 phosphatidylethanolamine-binding protein8 GRMZM2G179264 EU241924 chr8 2 Good Sb09g025760 Os05g44180
zcn9 phosphatidylethanolamine-binding protein9 GRMZM2G021614 EU241925 chr8 2 Good Sb03g008270 Os01g02120
zfl1 zea floricaula/leafy1 GRMZM2G098813 AY179882 chr10 2 Good Sb06g027340 Os04g51000
zfl2 Zea floricaula leafy2 GRMZM2G180190 AY179881 chr2 1 Good Sb06g027340 Os04g51000
zmm2 Zea mays MADS2 GRMZM2G359952 X81200 chr8 2 Good Sb03g002525 Os01g10504
zmm24 Zea mays MADS24 GRMZM2G087095 AJ430638 chr1 GRMZM2G032339 1 Good Sb01g007790 Os03g54160
zmm31 Zea mays MADS31 GRMZM2G071620 AJ430640 chr5 GRMZM2G553379 2 Good Sb01g007790 Os03g54160
zmm6 Zea mays MADS6 GRMZM2G159397 AJ430692 chr1 GRMZM2G098986 1 Good Sb07g026180 Os08g41950
zmm7 Zea mays MADS7 GRMZM2G129034 Y09302 chr2 2 Good Sb02g029310 Os09g32948
zmm8 Zea mays MADS8 GRMZM2G102161 Y09303 chr9 2 Good Sb01g042840 Os03g11614
znf1 zinc finger protein1 GRMZM5G836222 W99253 GRMZM5G803160 1 Good Sb10g024060 Os06g41010
zp1 zein alpha protein1 GRMZM2G008913 X58700 chr4 2 Good|inversion in nongene sequence downstream of gene too big a gap too big a gap
zp15 zein protein GRMZM2G086294 M12147 chr6 1 Good Sb09g000360 chr5:0-218039
zp27 27-kDa zein protein GRMZM2G138727 M16218 chr7 GRMZM2G438538 1 Good Sb02g025510 chr9:15882395-16462627
zpl2b zein polypeptidesL2b GRMZM2G404459 AF371270 chr4 GRMZM2G018193||GRMZM2G053120||GRMZM2G059620||GRMZM2G353268||GRMZM2G353272||GRMZM2G489581||GRMZM2G514379||GRMZM2G514469||GRMZM2G514479||GRMZM2G514485||GRMZM2G518465||GRMZM2G545000||GRMZM2G586611 1 Good too big a gap chr11:22583954-23404386