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Research Findings from the CSAGRIM Project


Primary Literature Resulting from Research Fully or Partialy Supported by this Project

Book Chapters:

  • (2011) Figueroa DM, Amarillo FE, and Bass HW. "Cytogenetic Mapping in Plants"; in Plant Cytogenetics (eds. HW Bass and JA Birchler); Springer New York, NY.

  • (2011) Fincher JA and Dennis JH "DNA sequence contribution to nucleosome distribution"; in Epigenetics: A reference manual (eds. JM Craig and NC Wong); Norwich, UK: Horizon Scientific Press, pp 133-142.

  • (2011) Murphy SP and Bass HW "Genetics and Cytology of Meiotic Chromosome Behavior in Plants"; in Plant Cytogenetics (eds. HW Bass and JA Birchler); Springer New York, NY

  • (2011) Spetman B, Lueking S, Druliner BR, and Dennis JH. "Microarray mapping of nucleosome position"; in Epigenetics: A reference manual (eds. JM Craig and NC Wong); Norwich, UK: Horizon Scientific Press, pp 337-347.
  • (2013) Howe ES, Murphy SP, and Bass HW. "Three-dimensional acrylamide fluorescence in situ hybridization (FISH) for plant cells"; in Methods in Molecular Biology: Plant Meiosis (eds. WP Pawlowski, M Grelon, and S Armstrong); Springer New York Volume 990, pp 53-66.

Poster Presentations at National or International Conferences:

    2010 (* presenting authors)

  • JH Dennis, JA Fincher, KM McGinnis*, and HW Bass* Nucleosome Mapping and Chromatin Structure in Maize, a Novel Platform for Genome Response Assays. 52nd Annual Maize Genetics Conference; Riva del Garda, Italy; March 18-21, 2010.

  • HW Bass*, JH Dennis, KM McGinnis, OU Onokpise, & JA Fincher. Nucleosome Mapping and Chromatin Structure in Maize, a Novel Platform for Genome Response Assays. NSF Plant Genome Research Program Awardee Meeting. Arlington, VA, September, 2010.

    2011

  • HW Bass*, JA Fincher, KM McGinnis, and JH Dennis. Nucleosome Mapping And Chromatin Structure In Maize, A Novel Platform For Genome Response Assays. Plant and Animal Genome XIX Conference; San Diego, CA; January 15-18, 2011.

  • JA Fincher*, BL Bremen, TZ Sen, JH Dennis, and HW Bass. Using a Support Vector Machine to Predict Nucleosome Occupancy Likelihood (NOL) in the Maize Genome. 53rd Annual Maize Genetics Conference; St. Charles, IL; March 17-20, 2011.

  • PM Alam, DL Vera, JA Fincher, KM McGinnis, HW Bass, and JH Dennis*. Nucleosome distribution and promoter architecture at 400 genes in the maize genome. 53rd Annual Maize Genetics Conference; St. Charles, IL; March 17-20, 2011.

  • DL Vera*, KM McGinnis, JH Dennis, and HW Bass. Analysis of Chromatin Accessibility in the Maize Interphase Nucleus. 53rd Annual Maize Genetics Conference; St. Charles, IL; March 17-20, 2011.

  • JA Fincher*, DL Vera, HW Bass, JH Dennis. Overlapping but distinct DNA sequence features drive nucleosome organization in maize and humans. Dynamic DNA Packaging Across Kingdoms: Chromatin and Beyond; Biophysical Society; Asilomar, CA; July 5-5, 2011.

  • HW Bass*, JH Dennis, KM McGinnis, OU Onokpise, JA Fincher, DL Vera, JD Labonne, MP Alam, TF Madzima, and GG Hoffman Nucleosome Mapping and Chromatin Structure in Maize, a Novel Platform for Genome Response Assays. NSF Plant Genome Program (PGRP) Awardee meeting; Arlington VA; September 8-9, 2011.

    2012

  • DL Vera*, HW Bass, JH Dennis. Chromatin accessibility is largely unaltered by the transition to mitotic chromosomes. Keystone Symposia: Epigenomics; Keystone, CO; January 17-22, 2012.

  • JDJ Labonne, DL Vera, AM Parwez, TF Madzima, GG Hoffman*, JH Dennis, KM McGinnis, & HW Bass. Development of a robust method for microscopic and molecular assays of nuclear architecture and chromatin structure in maize.54th Annual Maize Genetics Conference; Portland, OR; March 15-18, 2012.

  • DL Vera*, DD Hughes, JH Dennis, & HW Bass. Defining the chromatin domain organization of the maize genome.54th Annual Maize Genetics Conference; Portland, OR; March 15-18, 2012.

  • HW Bass*, DL Vera, DD Hughes, JA Fincher, PM Alam, JDJ Labonne, TF Madzima, Z Wiggins, OU Onokpise, SP Moose, KM McGinnis, & JH Dennis. Tissue- specific nucleosome occupancy in the promoter/TSS region of 400 classical maize genes 54th Annual Maize Genetics Conference; Portland, OR; March 15-18, 2012.

  • DL Vera*, JH Dennis, HW Bass. Using empirical maize chromatin data to train a support vector machine to predict nucleosome occupancy likelihood (NOL). 54th Annual Maize Genetics Conference; Portland, OR; March 15-18, 2012.

  • HW Bass*, DL Vera, DD Hughes, JA Fincher, AM Parwez, JDJ Labonne, TF Madzima, ZJ Wiggins, OU Onokpise, GH Hoffman, KM McGinnis, & JH Dennis. Chromatin Structure and Genome Response in Maize. NSF Plant Genome Research Program Awardee Meeting; Arlington, VA; September 6-7, 2012.


 

NSF Award Abstract

Bass Lab Homepage

MaizeGDB
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PI: Dr. Hank W. Bass, Florida State University
Funded by the NSF Plant Genome Research Program
NSF Award Abstract 1025954
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