A

B

C

D

E

F

G

H

I

J

K


1

short name (gene_symbol)

long name (gene_name)


gene_model


assembly_version


locus_type


chr


start


end


short name


synonyms (via maizegdb)


description via maizegdb


2


a1


anthocyaninless1


GRMZM2G026930


B73 RefGen_v3


Gene


Chr3


216386031


216387865


a1


a1, anthocyaninless1, bnl(a1), gsy38(A1), npi467, npi51, umc199(a1)


colorless aleurone, green or brown plant; brown pericarp with P1-rr


3


a2


anthocyaninless2


GRMZM2G345717


B73 RefGen_v3


Gene


Chr5


66136522


66139360


a2


a2, anthocyaninless2


like a1, but red pericarp with P1-rr


4


a4


anthocyaninless4


GRMZM2G013726


B73 RefGen_v3


Gene


Chr8


145645771


145647394


a4


A1*, a1(6), a4, anthocyaninless4, bnl17.01, umc189a, umc189(a1), umc189a(a1)

in tissues analyzed-cob, husks, kernel; function of gene product not known (Bernhardt et al. 1998)


5


aaa1


adenosylmethionine aminotransferase1


GRMZM5G817886


B73 RefGen_v3


Gene


Chr2


10216755


10222011


aaa1

aaa1, adenosylmethionine aminotransferase1, PCO069643, pco069643(115), uaz113, uaz113(gfu)


endosperm cDNA 5C01E09 (uaz113) similar to bacterial biotin synthesis enzyme


6


aap1


acylaminoacyl-peptidase1


GRMZM2G120302


B73 RefGen_v3


Gene


Chr9


7579688


7587102


aap1


aap1, acylaminoacyl-peptidase1, PCO061185, uaz5c09a06(gfu)


endosperm cDNA 5C09A06, similar to acylaminoacyl-peptidase


7


aasr1


abscisic acid stress ripening1


GRMZM2G136910


B73 RefGen_v3


Gene


Chr10


8852553


8853933


aasr1

csu103(hupm), csu250a, csu250a(aba), csuh103, gnp_L346, gpm930, hhp1, IDP9044, phi059, umc1582, umc364(gfu), ZmAsr1

protects the major ARS protein in maize; protects kernel yield under water deficit; SSR pio059, IDP9044


8


aasr2


abscisic acid stress ripening2


GRMZM5G854138


B73 RefGen_v3


Gene


Chr2


139700113


139701207


aasr2


aasr2, abscisic acid stress ripening2, csu850, csu851a, csuh00850, csuh850, ZmASR2


9


aasr3


abscisic acid stress ripening3


GRMZM2G044132


B73 RefGen_v3


Gene


Chr2


54473360


54474872


aasr3


aasr3, abscisic acid stress ripening3, pco156020, umc2088, ZmASR3


10


aasr5


abscisic acid stress ripening5


GRMZM2G052100


B73 RefGen_v3


Gene


Chr10


116077391


116078438


aasr5


aasr5, aba5, abscisic acid stress ripening5, AY109698, CL4149_1, IDP2437, ZmASR5


11


aasr6


abscisic acid stress ripening6


GRMZM2G057841


B73 RefGen_v3


Gene


Chr5


171162247


171162872


aasr6

aasr6, aba6, abscisic acid stress ripening6, abscisic stress-ripening protein 3-like, TIDP9149, ZmASR6


12


aasr7


abscisic acid stress ripening7


GRMZM2G014797


B73 RefGen_v3


Gene


Chr3


65662114


65662673


aasr7


aasr7, aba7, abscicic acid stress ripening7, ZmASR7-1


13


aasr8


abscisic acid stress ripening8


GRMZM2G314075


B73 RefGen_v3


Gene


Chr3


65665421


65666059


aasr8


aasr8, aba8, abscisic acid stress ripening8, ZmASR7-2


14


aasr9


abscisic acid stress ripening9


GRMZM2G383699


B73 RefGen_v3


Gene


Chr3


65739867


65740452


aasr9


aasr9, aba9, abscisic acid stress ripening9, IDP6829, ZmASR7-3


15


abc1


ABC(yeast) homolog1


GRMZM2G157369


B73 RefGen_v3


Gene


Chr4


171570493


171575379


abc1

abc1, ABC(yeast) homolog1, CL26230_1, CL26230_1(329), <i>a</i>ctivator of cytochrom

<i>bc1</i> complex (ABC1) kinases, uaz263, uaz263(gfu), uaz5c06a01


endosperm cDNA 5C05H02(uaz263) similar to yeast ABC1 protein


16


abcf1


ABC family1


GRMZM2G105570


B73 RefGen_v3


Gene


Chr2


229565962


229569990


abcf1


abcf1, ATP-binding cassette transporterF1, PCO135043


transmembrane transport


17


abcg11


ABC transporter G family member 11


GRMZM2G177812


B73 RefGen_v3


Gene


Chr2


24498593


24503843


abcg11

abcg11, ATP-binding cassette transporterG11, gnp_QCF18c07a, gnp_QCF5a04, gpm627a, gpm636, PCO068684

cassette transporter; cutin transport to extracellular matrix. Ortholog of Arabidopsis ABCG11/COF1/WBC11. Plasma membrane-localized ATP-binding cassette transporter; cutin


18


abh1


abscisic acid 8'-hydroxylase1


GRMZM2G179147


B73 RefGen_v3


Gene


Chr5


200705194


200707991


abh1


ABA8ox1a, abh1, CYP707A3, PCO110502(446), PCO110502b


19


abh2


abscisic acid 8'-hydroxylase2


GRMZM2G126505


B73 RefGen_v3


Gene


Chr4


159692123


159694949


abh2


ABA8ox1b, abh2, bnl29(pds2), PCO110502a, umc1299


20


abh3


abscisic acid 8'-hydroxylase3


GRMZM2G105954


B73 RefGen_v3


Gene


Chr4


57970815


57976241


abh3


ABA8ox2, abh3, abscisic acid 8'-hydroxylase3


21


abh4


abscisic acid 8'-hydroxylase4


GRMZM2G065928


B73 RefGen_v3


Gene


Chr7


126008605


126011545


abh4


ABA8Ox3a, abh4, abscisic acid 8'-hydroxylase4


22


abh5


abscisic acid 8'-hydroxylase5


GRMZM2G002142


B73 RefGen_v3


Gene


Chr2


186842961


186845670


abh5


ABA8Ox3b, abh5, abscisic acid 8'-hydroxylase5


23


abi10


ABI3-VP1-transcription factor 10


AC193767.3_FG003


B73 RefGen_v3


Gene


Chr10


148761047


148762234


abi10

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


24


abi11


ABI3-VP1-transcription factor 11


GRMZM2G065478


B73 RefGen_v3


Gene


Chr1


165089891


165092452


abi11

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


25


abi12


ABI3-VP1-transcription factor 12


GRMZM2G102059


B73 RefGen_v3


Gene


Chr2


15033794


15035837


abi12

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


26


abi13


ABI3-VP1-transcription factor 13


GRMZM2G018336


B73 RefGen_v3


Gene


Chr5


28659785


28661138


abi13

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


27


abi14


ABI3-VP1-transcription factor 14


GRMZM2G106673


B73 RefGen_v3


Gene


Chr4


26518896


26526586


abi14

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


28


abi15


ABI3-VP1-transcription factor 15


GRMZM2G361376


B73 RefGen_v3


Gene


Chr3


232108213


232112166


abi15

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


29


abi16


ABI3-VP1-transcription factor 16


GRMZM2G024948


B73 RefGen_v3


Gene


Chr5


196729019


196731042


abi16

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


30


abi17


ABI3-VP1-transcription factor 17


GRMZM2G017187


B73 RefGen_v3


Gene


Chr2


48136356


48141220


abi17

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


31


abi18


ABI3-VP1-transcription factor 18


GRMZM2G019956


B73 RefGen_v3


Gene


Chr5


18152128


18154870


abi18

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


32


abi19


ABI3-VP1-transcription factor 19


GRMZM2G035701


B73 RefGen_v3


Gene


Chr8


154216668


154220485


abi19


ZmAFL2

and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


33


abi2


ABI3-VP1-transcription factor 2


GRMZM2G018485


B73 RefGen_v3


Gene


Chr10


134624802


134626574


abi2

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


34


abi20


ABI3-VP1-transcription factor 20


GRMZM2G313737


B73 RefGen_v3


Gene


Chr8


155378968


155387313


abi20

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


35


abi21


ABI3-VP1-transcription factor 21


GRMZM2G126194


B73 RefGen_v3


Gene


Chr10


109396005


109397093


abi21

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


36


abi22


ABI3-VP1-transcription factor 22


GRMZM2G008356


B73 RefGen_v3


Gene


Chr7


157708697


157716763


abi22

abi22, ABI3-VP1-transcription factor 22, hca1, PCO071471, pco071471(576), uaz199, uaz5c04c07, ZmAFL1

assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


37


abi23


ABI3-VP1-transcription factor 23


GRMZM2G180168


B73 RefGen_v3


Gene


Chr10


78160467


78161649


abi23

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


38


abi24


ABI3-VP1-transcription factor 24


GRMZM2G088413


B73 RefGen_v3


Gene


Chr1


254478910


254482162


abi24

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


39


abi25


ABI3-VP1-transcription factor 25


GRMZM2G344521


B73 RefGen_v3


Gene


Chr1


254590445


254594484


abi25

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


40


abi26


ABI3-VP1-transcription factor 26


GRMZM2G423393


B73 RefGen_v3


Gene


Chr10


67375028


67375918


abi26

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


41


abi27


ABI3-VP1-transcription factor 27


GRMZM2G123461


B73 RefGen_v3


Gene


Chr1


180722884


180724089


abi27

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


42


abi28


ABI3-VP1-transcription factor 28


GRMZM2G109879


B73 RefGen_v3


Gene


Chr2


103802791


103809253


abi28

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


43


abi29


ABI3-VP1-transcription factor 29


GRMZM2G084173


B73 RefGen_v3


Gene


Chr6


68219540


68224677


abi29

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


44


abi3


ABI3-VP1-transcription factor 3


GRMZM2G149940


B73 RefGen_v3


Gene


Chr2


1684944


1691150


abi3


abi3, ABI3-VP1-transcription factor 3, ZmAFL4

and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


45


abi30


ABI3-VP1-transcription factor 30


GRMZM2G088427


B73 RefGen_v3


Gene


Chr1


254487577


254489679


abi30

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


46


abi31


ABI3-VP1-transcription factor 31


GRMZM2G177244


B73 RefGen_v3


Gene


Chr3


165897795


165900405


abi31

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


47


abi32


ABI3-VP1-transcription factor 32


GRMZM2G158162


B73 RefGen_v3


Gene


Chr7


173216702


173223537


abi32

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


48


abi33


ABI3-VP1-transcription factor 33


GRMZM2G065538


B73 RefGen_v3


Gene


Chr8


152001159


152002001


abi33

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


49


abi34


ABI3-VP1-transcription factor 34


GRMZM2G125095


B73 RefGen_v3


Gene


Chr1


83653655


83654919


abi34

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


50


abi35


ABI3-VP1-transcription factor 35


GRMZM5G834874


B73 RefGen_v3


Gene


Chr5


181252639


181256424


abi35

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


A

B

C

D

E

F

G

H

I

J

K


1

short name (gene_symbol)

long name (gene_name)


gene_model


assembly_version


locus_type


chr


start


end


short name


synonyms (via maizegdb)


description via maizegdb


51


abi36


ABI3-VP1-transcription factor 36


GRMZM2G001048


B73 RefGen_v3


Gene


Chr4


14748387


14751790


abi36

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


52


abi37


ABI3-VP1-transcription factor 37


GRMZM2G027253


B73 RefGen_v3


Gene


Chr6


56611496


56612170


abi37

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


53


abi38


ABI3-VP1-transcription factor 38


GRMZM2G142999


B73 RefGen_v3


Gene


Chr9


125822461


125823598


abi38

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


54


abi39


ABI3-VP1-transcription factor 39


GRMZM2G172621


B73 RefGen_v3


Gene


Chr2


217651494


217673563


abi39

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


55


abi4


ABI3-VP1-transcription factor 4


GRMZM2G098063


B73 RefGen_v3


Gene


Chr1


254460346


254462461


abi4

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


56


abi40


ABI3-VP1-transcription factor 40


GRMZM2G328742


B73 RefGen_v3


Gene


Chr4


189990840


189992872


abi40

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


57


abi41


ABI3-VP1-transcription factor 41


GRMZM5G805685


B73 RefGen_v3


Gene


Chr10


6074814


6076964


abi41

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


58


abi42


ABI3-VP1-transcription factor 42


GRMZM2G098443


B73 RefGen_v3


Gene


Chr8


96201480


96202346


abi42

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


59


abi43


ABI3-VP1-transcription factor 43


GRMZM2G028794


B73 RefGen_v3


Gene


Chr9


150250653


150252625


abi43

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


60


abi44


ABI3-VP1-transcription factor 44


GRMZM2G405170


B73 RefGen_v3


Gene


Chr10


44129684


44130359


abi44

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


61


abi45


ABI3-VP1-transcription factor 45


GRMZM2G174610


B73 RefGen_v3


Gene


Chr6


154832684


154837678


abi45

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


62


abi46


ABI3-VP1-transcription factor 46


GRMZM2G065496


B73 RefGen_v3


Gene


Chr1


165085207


165088108


abi46

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


63


abi47


ABI3-VP1-transcription factor 47


GRMZM2G125596


B73 RefGen_v3


Gene


Chr4


195559254


195562953


abi47


ZmAFL6

assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


64


abi48


ABI3-VP1-transcription factor 48


GRMZM2G111123


B73 RefGen_v3


Gene


Chr3


221999802


222002668


abi48

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


65


abi49


ABI3-VP1-transcription factor 49


GRMZM2G405699


B73 RefGen_v3


Gene


Chr6


267970


270851


abi49


ABI3-VP1-transcription factor 49, abi49, ZmAFL5

and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


66


abi5


ABI3-VP1-transcription factor 5


GRMZM2G320754


B73 RefGen_v3


Gene


Chr5


18103497


18105325


abi5

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


67


abi50


ABI3-VP1-transcription factor 50


GRMZM2G102938


B73 RefGen_v3


Gene


Chr6


57753651


57755275


abi50

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


68


abi51


ABI3-VP1-transcription factor 51


GRMZM2G173321


B73 RefGen_v3


Gene


Chr10


65200137


65213038


abi51

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


69


abi6


ABI3-VP1-transcription factor 6


GRMZM2G160224


B73 RefGen_v3


Gene


Chr1


25616688


25619269


abi6

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


70


abi7


ABI3-VP1-transcription factor 7


GRMZM2G109480


B73 RefGen_v3


Gene


Chr1


17698816


17700801


abi7

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


71


abi8


ABI3-VP1-transcription factor 8


GRMZM2G082227


B73 RefGen_v3


Gene


Chr1


4541352


4542978


abi8

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


72


abi9


ABI3-VP1-transcription factor 9


GRMZM2G522066


B73 RefGen_v3


Gene


Chr1


165099882


165101147


abi9

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


73


abil1


abelson interactor1-like protein1


GRMZM5G832362


B73 RefGen_v3


Gene


Chr3


226961580


226962818


abil1


ABI-1-like protein, abil1


74


abk1


aurora b kinase1


GRMZM2G132116


B73 RefGen_v3


Gene


Chr3


6793085


6797402


abk1


abk1


75


abp1


auxin binding protein1


GRMZM2G116204


B73 RefGen_v3


Gene


Chr3


133916691


133921441


abp1


abp1, aux311, auxin binding protein1, axr1

putative auxin receptor, single band in Southerns, endoplasmic reticulum and plasma membrane locales (aka axr1, aux311)


76


abp4


auxin binding protein homolog4


GRMZM2G064371


B73 RefGen_v3


Gene


Chr10


26670823


26673897


abp4


abp4, auxin binding protein homolog4, CL1150_1, cl1150_1(726), Zm-ERabp4

putative auxin receptor, genomic clone, promoter-reporter gene fusion functional in maize leaf protoplasts. cDNA ZmERabp4 probes one band on Southerns


77


abph1


aberrant phyllotaxy1


GRMZM2G035688


B73 RefGen_v3


Gene


Chr2


28104302


28109281


abph1

aberrant phyllotaxy1, abph1, abphyl, response regulator3, rs129036669, rs131175414,

rs131175415, rs131175416, rs131175417, ss196415049, ss196415051, ZmOrphan266, ZmRR3 decussate leaves and ear shoots (opposite at nodes) frequent; variable, recessive


78


AC199769 GRMZM2G333861 B73 RefGen_v3 BAC Chr8 163203515 163205870 AC199769 c0274C20


79


AC210173.4_FG005 AC210173.4_FG005 B73 RefGen_v3 Gene Chr1 224102016 224105678 AC210173.4_Fcytochrome P450 84A1-like, ZmF5H


80


acb1


Acyl-CoA-binding protein1


GRMZM2G079908


B73 RefGen_v3


Gene


Chr10


76415905


76418574


acb1


acb1, csu613(acb), PCO107996af, rgpr1908b(acb)


81


acc1


acetyl-coenzyme A carboxylase1


AC197672.3_FG002


B73 RefGen_v3


Gene


Chr10


98149608


98168566


acc1

acc1, acc2, acc*-pA4, acc*-U90128, acetyl CoA carboxlase*-pA4, acetyl-CoA carboxylase A candidate, acetyl-CoA carboxylase II, CL2223_1a, gnp_QCG7e03, gpm656, MR3, pA4

tissue-culture selected resistance to cyclohexanedione (e.g., sethoxydim) and aryloxy phenoxypropionate (e.g., haloxyfop) herbicides; encodes acetyl-CoA carboxylase


82


acc2


acetyl-CoA carboxylase2


GRMZM5G858094


B73 RefGen_v3


Gene


Chr2


83024018


83036516


acc2

acc2, ACCase II, accB, acc*-pA3, Acc-S2, acc*-U19183, acetyl CoA carboxylase*-pA3, acetyl- coenzyme A carboxylase I, CL2223_1b, MR1, MR2, pA3, umn1, umn1(acc), umng1, umng2


graminicide (e.g., sethoxydim, haloxyfop) resistance; encodes acetyl-CoA carboxylase


83


acco1


1-aminocyclopropane-1-carboxylate oxid GRMZM2G164883


B73 RefGen_v3


Gene


Chr6


104114291


104115533


acco1


acco1, ZmACOA


84


acco15


1-aminocyclopropane-1-carboxylate oxid GRMZM2G166639


B73 RefGen_v3


Gene


Chr10


90488171


90489769


acco15


acco15, ZmACO15


85


acco2


1-aminocyclopropane-1-carboxylate oxid GRMZM2G007249


B73 RefGen_v3


Gene


Chr7


124313854


124315851


acco2


acco2, cl955_1, cl955_1(563), ZmACOB


86


acco20


1-aminocyclopropane-1-carboxylate oxid GRMZM2G126732


B73 RefGen_v3


Gene


Chr4


177657802


177660210


acco20


acco20, ACC oxidase20, ACO20, ZmACO20


87


acco3


1-aminocyclopropane-1-carboxylate oxid GRMZM2G166616


B73 RefGen_v3


Gene


Chr10


90480467


90481799


acco3


acco3, ZmACOC


88


acco31


1-aminocyclopropane-1-carboxylate oxid GRMZM2G072529


B73 RefGen_v3


Gene


Chr10


90301775


90303069


acco31


acco31, ZmACO31


89

1-aminocyclopropane-1-carboxylate oxidase 1, acco35, ACC oxidase35, PCO145638(452),

acco35 1-aminocyclopropane-1-carboxylate oxid GRMZM2G052422 B73 RefGen_v3 Gene Chr5 210825846 210828416 acco35 PCO145638b, ZmACO35


90


acco4


1-aminocyclopropane-1-carboxylate oxid GRMZM2G332423


B73 RefGen_v3


Gene


Chr10


90448978


90450072


acco4


acco4, ZmACOD


91


ache1


acetylcholinesterase1 GRMZM6G953609


B73 RefGen_v3


Gene


scaffold_ 9


854


ache1


acetylcholinesterase1, AChE, ache1, alpha-L-fucosidase 2 precursor, PCO131316


92


aco1


aconitase1 GRMZM2G020801


B73 RefGen_v3


Gene


Chr4 28147612


28154163


aco1


aco1, aconitase1


electrophoretic mobility; monomeric


93


aco2


aconitase2 GRMZM5G858454


B73 RefGen_v3


Gene


Chr10 96344573


96353240


aco2


aco2, IDP1618, PCO139346


electrophoretic mobility


94


aco3


aconitase3 GRMZM2G009808


B73 RefGen_v3


Gene


Chr9 152030140


152038415


aco3


aco3, aconitase3, pco068697(524)


electrophoretic mobility


95


aco5


aconitase5 GRMZM2G171707


B73 RefGen_v3


Gene


Chr2 203572465


203578306


aco5


aco4, aco5


96


acp1


acid phosphatase1 AC211394.4_FG004


B73 RefGen_v3


Gene


Chr9 95254430


95260811


acp1


acid phosphatase1, acp1, Acph1, Ap1, Phos, purple acid phosphatase


electrophoretic mobility; cytosolic; dimeric


97


acpt1


acyl carrier protein1 GRMZM2G175818


B73 RefGen_v3


Gene


Chr1 206784775


206787442


acpt1

Acl1, acpt1, acyl carrier protein1, gnp_QAE18b02a, gpm276a, IDP812, IDP862, pco060888, pco060888(64)


acyl carrier protein (acp) cDNA, encodes 121 aa polypeptide, contains transit peptide sequence


98


acs1


1-aminocyclopropane-1-carboxylate synt GRMZM2G163015


B73 RefGen_v3


Gene


Chr3 6433703


6435769


acs1


accs1, acs1, ZmACSA


99

1-aminocyclopropane-1-carboxylate synthase2, accs2, ACC synthase2, acs2, ACS47,

acs2 1-aminocyclopropane-1-carboxylate synt GRMZM2G164405 B73 RefGen_v3 Gene Chr2 15900748 15904400 acs2 ZmACS2, ZmACS7


A

B

C

D

E

F

G

H

I

J

K


1

short name (gene_symbol)

long name (gene_name)


gene_model


assembly_version


locus_type


chr


start


end


short name


synonyms (via maizegdb)


description via maizegdb


100


acs3


1-aminocyclopropane-1-carboxylate synt GRMZM2G018006


B73 RefGen_v3


Gene


Chr9


23963178


23966958


acs3


accs3, acs3, ZmACSB


101

1-aminocyclopropane-1-carboxylate synthase6, accs6, ACC synthase6, acs6, ACS65, ZmAcs6,

acs6 1-aminocyclopropane-1-carboxylate synt GRMZM2G054361 B73 RefGen_v3 Gene Chr1 271834818 271837308 acs6 ZmACS6


102

1-aminocyclopropane-1-carboxylate synthase7, accs7, ACC synthase7, ACS50, acs7,

acs7 1-aminocyclopropane-1-carboxylate synt GRMZM5G894619 B73 RefGen_v3 Gene Chr10 136107954 136110772 acs7 PCO143423, PCO143423(757), ZmACS2, ZmAcs7


103


act1


actin1


GRMZM2G126010


B73 RefGen_v3


Gene


Chr8


99906105


99909909


act1


act1, actin 1, bnl(act1), npi368-act1, npi368(act1), PCO080070, phi115


actin, one of six potential genes; genomic DNA clone; 3 introns); SSR phi115


104


act2 actin2 Zm00001d012277 Zm-B73-REFERENCE-G Gene Chr8 171775071 171778423 act2 act2, actin2, actin-7, CL1968_3k, Maz89


105


adf1


actin depolymerizing factor1


GRMZM2G117603


B73 RefGen_v3


Gene


Chr7


148916447


148917753


adf1


actin depolymerizing factor1, adf1, PCO095832, pco095832(571), ZmABP1


pollen-specific cDNA similar to vertebrate actin polymerization/depolymerization factors


106


adf2


actin depolymerizing factor2


GRMZM2G097122


B73 RefGen_v3


Gene


Chr2


200140261


200141322


adf2


actin depolymerizing factor2, adf2, pco095832, pco095832(571), ZmABP2


pollen-specific cDNA similar to vertebrate actin polymerization/depolymerization factors


107


adf3


actin depolymerizing factor3


GRMZM2G060702


B73 RefGen_v3


Gene


Chr1


293239343


293243048


adf3

ABP3, actin depolymerizing factor3, adf3, ADF3, pco115125(102), pco115125a, ZmABP3, ZmADF3

pollen; expressed in E. coli; two copies detected in Southerns and by one overgo (PCO115125a in ctg64, 1L; PCO115125b in ctg204, 5S), which are syntenous regions.


108


adf5


actin depolymerizing factor5


GRMZM2G077942


B73 RefGen_v3


Gene


Chr1


32872877


32876200


adf5

actin depolymerizing factor5, adf5, pco091760, pco091760(14), rs128410876 , rs131232694 , umc1044, umc1073


109


adh1


alcohol dehydrogenase1


GRMZM2G442658


B73 RefGen_v3


Gene


Chr1


274050254


274054148


adh1

IDP35, magi75238, npi21-adh1, npi21(adh1), PCO141653, rgpc496a(adh), umc1726, umc(adh1)

electrophoretic mobility; null alleles are known; dimeric; intra/interlocus hybrid bands occur); SSR umc1726


110


adh2


alcohol dehydrogenase2


GRMZM2G098346


B73 RefGen_v3


Gene


Chr4


13409584


13412986


adh2

adh2, alcohol dehydrogenase2, nc004, npi228-adh2, phi021, rgpc496b(adh), umc200a, umc200a(adh2)

electrophoretic mobility, null alleles are known; dimeric, intra/interlocus hybrid bands occur; SSRs nc004, phi021


111


adk1


adenylate kinase1


GRMZM2G178192


B73 RefGen_v3


Gene


Chr6


2450158


2455264


adk1


adenylate kinase1, adk1, pco088037(462), pco088037a


electrophoretic mobility; plastidial


112


adss1


adenylosuccinate synthetase


GRMZM2G119852


B73 RefGen_v3


Gene


Chr1


15773077


15777890


adss1


adenylosuccinate synthetase, ads1, adss1, CL2010_1, pza02094


113


adt6


arogenate dehydratase6


GRMZM2G437912


B73 RefGen_v3


Gene


Chr2


59667646


59669581


adt6


adt6


114


adxr1 adrenodoxin reductase1 Zm00001d053301 Zm-B73-REFERENCE-G Gene Chr4 225026663 225038512 adxr1 pco114328(55)


115


ae1


amylose extender1


GRMZM2G032628


B73 RefGen_v3


Gene


Chr5


168492139


168509225


ae1

ae1, amylose extender1, AY109532, CL1742_1, ha1, high amylose1, rs131175699, rs131175700, Sbe, sbe2, ss196416186, ss196416189, starch branching enzyme2

glassy, tarnished endosperm; high amylose content; application: highly linear starch is used for food films, fibers, and other industrial purposes


116


afd1


absence of first division1


GRMZM2G059037


B73 RefGen_v3


Gene


Chr6


166795461


166827341


afd1


absence of first division1, afd1, REC8, si618011B05, si618011b05(525)


male and female sterility; early meiosis


117


agal1


alpha-galactosidase1


GRMZM2G095126


B73 RefGen_v3


Gene


Chr1


228378444


228381659


agal1

agal1, CL6071_1, CL6071_1(71), phi037, phi038, phi039, rs131860003, umc1013, umc128a, umc128(aga), umc128b


Entrez Gene relates to alpha-galactosidase 1 (AGAL) of Arabidopsis


118


ago1


argonaute1


GRMZM2G162525


B73 RefGen_v3


Gene


Chr8


134439555


134444960


ago1


ago1, ago113, argonaute1, cl857_3(631), cl857_3b, gpm630


Proposed to interact with small RNAs in dorsiventral leaf patterning


119


ago101


argonaute101


AC189879.3_FG003


B73 RefGen_v3


Gene


Chr9


87408375


87414276


ago101


AGO10a, gpm721


120


ago104


argonaute104


GRMZM2G141818


B73 RefGen_v3


Gene


Chr6


168642369


168650358


ago104


ago104, AGO4b, argonaute104, dnr4


121


ago105


argonaute105


GRMZM2G089743


B73 RefGen_v3


Gene


Chr3


43646012


43657336


ago105


CL881_1


122


ago108


argonaute108


GRMZM2G461936


B73 RefGen_v3


Gene


Chr5


13611800


13618698


ago108


ago108, ago5a


123


ago10b


argonaute10b


GRMZM2G079080


B73 RefGen_v3


Gene


Chr6


103286236


103293200


ago10b


ago10b, argonaute PNH1-like


124


ago18a


argonaute18a


GRMZM2G105250


B73 RefGen_v3


Gene


Chr2


199510528


199516085


ago18a


ago18a, argonaute 18-like, phm7953, PZA02533, rs131980012, ss196415237


125


ago18b


argonaute18b


GRMZM2G457370


B73 RefGen_v3


Gene


Chr1


250132189


250137737


ago18b


ago18b, cl909_1, cl909_1(82), rs128929565 , rs131877871


126


ago1a


argonaute1a


GRMZM2G441583


B73 RefGen_v3


Gene


Chr6


43253105


43261555


ago1a


ago1a, argonaute 1B-like, ZmAGO1a


Ortholog of Arabidopsis ago1


127


ago1b


argonaute1b


AC209206.3_FG011


B73 RefGen_v3


Gene


Chr10


137506877


137513415


ago1b


ago1b, argonaute 1B-like, ZmAGO1b


Ortholog of Arabidopsis ago1


128


ago1c


argonaute1c


GRMZM2G039455


B73 RefGen_v3


Gene


Chr2


17563301


17573156


ago1c


ago1c, ZmAGO1c


Ortholog of Arabidopsis ago1


129


ago1d


argonaute1d


GRMZM2G361518


B73 RefGen_v3


Gene


Chr5


64791077


64796881


ago1d


ago1d, argonaute 1D-like, ZmAGO1d, ZmAGO1f


Ortholog of Arabidopsis ago1


130


ago2a


argonaute2a


GRMZM2G007791


B73 RefGen_v3


Gene


Chr2


9973816


9981340


ago2a


ago2a


131


ago2b


argonaute2b


GRMZM2G354867


B73 RefGen_v3


Gene


Chr10


141823070


141828449


ago2b


ago2b, argonaute 2-like


132


ago4a


argonaute4a


GRMZM2G589579


B73 RefGen_v3


Gene


Chr8


2511463


2518808


ago4a


ago4a


133


ago5b


argonaute5b


GRMZM2G059033


B73 RefGen_v3


Gene


Chr2


233385077


233392000


ago5b


ago5b


134


ago5c


argonaute5c


GRMZM2G123063


B73 RefGen_v3


Gene


Chr5


4001278


4009529


ago5c


ago5c, argonaute MEL1-like, MEIOSIS ARRESTED AT LEPTOTENE 1 (mel1) ortholog


135


ago6


argonaute6


GRMZM2G347402


B73 RefGen_v3


Gene


Chr7


72044775


72053779


ago6


ago6


136


agp1


ADP glucose pyrophosphorylase small s GRMZM2G106213


B73 RefGen_v3


Gene


Chr2


174023583


174034507


agp1

ADP glucose pyrophosphorylase small subunit embryo 1, agp1, agp2, agpsemzm, AY105915, PCO131593, sc237, ufg2, ufg2(agp2), ufg(agp2)

embryo cDNA that hybridizes to endosperm transcripts, distinct from sh2 and bt2 but most similar to the bt2 gene product


137


agp2


ADP glucose pyrophosphorylase2 GRMZM2G027955


B73 RefGen_v3


Gene


Chr6


166787452


166793059


agp2

gpm779, L2, pco103001, PHM5361, PZA00910, rs131175777, rs131175778, sc236,

ss196416505, ss196416507, ufg(agp1)


embryo specific counterpart to sh2


138


agpll1 ADP glucose pyrophosphorylase large suGRMZM2G391936 B73 RefGen_v3 Gene Chr1 273514151 273518985 agpll1 AGPL4, agpll1, agpllzm, ZmagpL1


139


agpll2 ADP glucose pyrophosphorylase large suGRMZM2G144002 B73 RefGen_v3 Gene Chr7 23769242 23780203 agpll2 AGPL, AGPL3, agpll2


140


agpsl1


ADP glucose pyrophosphorylase small s GRMZM2G163437


B73 RefGen_v3


Gene


Chr1


221701404


221705997


agpsl1

bnl17.15b, bnl17.15b(agp), bnl17.15b(bt2), btl1, btl2, gnp_QAN9g11, gpm377, gsy60b(bt2), gsy61(btl2), L2, sc61, SC61B13, siS72425, sis72425(71)


leaf-specific


141


agrr21


GRMZM2G302639


B73 RefGen_v3


Gene


Chr8


172961620


172964067


agrr21


agrr21, AY110127, CL4812_1, PZA02281, rs131175916, ss196417076


NCBI: protein CURVATURE THYLAKOID 1C, chloroplastic


142


ahh1


adenosyl homocysteine hydrolase1 GRMZM2G015295


B73 RefGen_v3


Gene


Chr4


21158461


21161610


ahh1

gpm544a, IDP38, PCO113569, pco113569a, rz900a(ahh), rz900(ahh), TIDP3741, uaz145,

UAZ145(AhCH), uaz145(ahh), uaz145(gfu)


endosperm cDNA 5C01H11 (uaz145) similar to plant activated methyl cycle enzyme


143


AI714808 GRMZM2G005346 B73 RefGen_v3 Gene Chr2 47788105 47793199 AI714808 similar to Arabidopsis protein phosphatase methylesterase 1


144


AI861369 GRMZM6G177089 B73 RefGen_v3 Gene Chr2 187273065 187274870 AI861369 similar to B. distachyon PREDICTED: receptor-like protein 2-like


145


aic1


auxin import carrier1 GRMZM2G129413


B73 RefGen_v3


Gene


Chr1


119659886


119663853


aic1

aic1, aux1, auxin import carrier1, CL468_2, cl468_2(41), Like Auxin-Resistant 2 (ZmLAX2), umc1689, ZmAUX1


cDNA encoding a protein with a deduced amino acid showing 73% identity to AtAUX1.


146


ak1


Adenylyl-sulfate kinase1 GRMZM2G061234


B73 RefGen_v3


Gene


Chr7


159799011


159812272


ak1


adenosine-5'-phosphosulfate kinase, Adenylyl-sulfate kinase1, ak1, CL95_-2b


147


ak2


ankyrin repeat protein2 GRMZM2G019838


B73 RefGen_v3


Gene


Chr4


239494965


239497297


ak2

ak2, Ankyrin repeat domain-containing protein EMB506 chloroplastic, pco138649, pco138649(366), PZA01243


148


akh2


aspartate kinase homoserine dehydrogenGRMZM2G104546


B73 RefGen_v3


Gene


Chr2


173486913


173506976


akh2


akh2, AK-HSDH2, aspartate kinase homoserine dehydrogenase2, CL2352_-1a


cDNA sequence 75% homologous to carrot threonine sensitive AK-HSDH bifunctional enzyme


A

B

C

D

E

F

G

H

I

J

K


1

short name (gene_symbol)

long name

(gene_name) gene_model


assembly_version locus_type


chr


start


end


short name


synonyms (via maizegdb) description via maizegdb


149


akin1


AKINbetagamma-1 protein kinase GRMZM2G047774


B73 RefGen_v3


Gene


Chr1


299540824


299549015


akin1


akin1, AKINbetagamma-1 protein kinase, CL367_1, csu1114, gnp_QBB7c06a, gpm434a


150


akr1


aldo/keto reductase AKR1 GRMZM2G052812


B73 RefGen_v3


Gene


Chr6


64079621


64110792


akr1

akr1, auxin induced protein homolog1, csu190, csu190(gfu), In2-2, pco148860, saf2, safener

induced2, TIDP3456 leaf cDNA csu190, similar to auxin-induced protein


151


al9


aleurone9 GRMZM2G091054


B73 RefGen_v3


Gene


Chr8


171118734


171119464


al9


al9, al-9, aleurone9 aleurone specific cDNA, unknown function


152


ald1


aldolase1 GRMZM2G057823


B73 RefGen_v3


Gene


Chr3


165765568


165768179


ald1

cytosolic aldolase; cDNA and genomic clones; Southern blots give single or double band; ald1, aldolase, aldolase1, fructose-bisphosphate aldolase cytoplasmic isozyme promoter functional in transient expression assay


153


ald2


aldolase2 GRMZM2G066024


B73 RefGen_v3


Gene


Chr8


162856704


162859417


ald2


ald2, aldolase2, gnp_QAM23g02, gpm362, umc216(ald1) second aldolase locus initially found by RFLP mapping using an ald1 probe


154


aldh2


aldehyde dehydrogenase2 GRMZM2G125268


B73 RefGen_v3


Gene


Chr4


165996358


165999622


aldh2

complement the ALDH deficient E. coli mutant; mitochondrial location inferred from presence of

aldehyde dehydrogenase2, aldh2, ALDH2B6, rf2b leader sequence


155


aldh3


aldehyde dehydrogenase3 GRMZM2G071021


B73 RefGen_v3


Gene


Chr3


221771183


221775333


aldh3


aldehyde dehydrogenase 3, ALDH2C2, aldh3, IDP10, IDP9, rf2c cDNA sequence similar to rf2; complements E. coli JA111 with defective ALDH


156


aldh5


aldehyde dehydrogenase5 GRMZM2G097706


B73 RefGen_v3


Gene


Chr3


221783373


221791498


aldh5


aldehyde dehydrogenase5, ALDH2C3, aldh5, PCO073335, rf2d, rf2d1 cDNA similar to rf2 (prf2d-exprA7); complements E. coli


157


alf1


Alfin-like-transcription factor 1 GRMZM2G148810


B73 RefGen_v3


Gene


Chr6


124888239


124892792


alf1

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL9 sequence v2 gene models.


158


alf10


Alfin-like-transcription factor 10 GRMZM2G050495


B73 RefGen_v3


Gene


Chr10


119722635


119728067


alf10

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL18 sequence v2 gene models.


159


alf11


Alfin-like-transcription factor 11 GRMZM2G158918


B73 RefGen_v3


Gene


Chr8


102976534


102982864


alf11

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL13 sequence v2 gene models.


160


alf12


Alfin-like-transcription factor 12 GRMZM5G893976


B73 RefGen_v3


Gene


Chr8


15276414


15280931


alf12

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL12 sequence v2 gene models.


161


alf13


Alfin-like-transcription factor 13 GRMZM2G080917


B73 RefGen_v3


Gene


Chr3


170149613


170154226


alf13

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

pco073257a, ZmAL4 sequence v2 gene models.


162


alf14


Alfin-like-transcription factor 14 GRMZM2G156088


B73 RefGen_v3


Gene


Chr10


119489514


119496893


alf14

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL17 sequence v2 gene models.


163


alf15


Alfin-like-transcription factor 15 AC225147.4_FG003


B73 RefGen_v3


Gene


Chr1


292952249


292956375


alf15

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL1 sequence v2 gene models.


164


alf16


Alfin-like-transcription factor 16 GRMZM2G016564


B73 RefGen_v3


Gene


Chr10


119517572


119518319


alf16

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


165


alf17


Alfin-like-transcription factor 17 GRMZM2G110952


B73 RefGen_v3


Gene


Chr5


2576260


2595158


alf17

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL7 sequence v2 gene models.


166


alf18


Alfin-like-transcription factor 18 GRMZM2G008259


B73 RefGen_v3


Gene


Chr4


11403566


11428284


alf18

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

alf18, AY110398, CL736_1, PZA02358, umc31a, ZmAL5 sequence v2 gene models.


167


alf19


Alfin-like-transcription factor 19 GRMZM2G047316


B73 RefGen_v3


Gene


Chr2


158912747


158917610


alf19

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL2 sequence v2 gene models.


168


alf2


Alfin-like-transcription factor 2 GRMZM2G063864


B73 RefGen_v3


Gene


Chr5


174455049


174458989


alf2

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

chr111 chromatin complex subunit A, ZmAL8 sequence v2 gene models.


169


alf3


Alfin-like-transcription factor 3 GRMZM2G038066


B73 RefGen_v3


Gene


Chr7


165038048


165044961


alf3

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL11 sequence v2 gene models.


170


alf4


Alfin-like-transcription factor 4 GRMZM2G153087


B73 RefGen_v3


Gene


Chr3


135934895


135940205


alf4

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

alf4, TIDP3057, ZmAL3 sequence v2 gene models.


171


alf5


Alfin-like-transcription factor 5 GRMZM2G016817


B73 RefGen_v3


Gene


Chr6


147835864


147843229


alf5

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL10 sequence v2 gene models.


172


alf6


Alfin-like-transcription factor 6 GRMZM2G115424


B73 RefGen_v3


Gene


Chr10


31315303


31320114


alf6

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL16 sequence v2 gene models.


173


alf7


Alfin-like-transcription factor 7 GRMZM2G107807


B73 RefGen_v3


Gene


Chr4


120648398


120651921


alf7

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL6 sequence v2 gene models.


174


alf8


Alfin-like-transcription factor 8 GRMZM2G172001


B73 RefGen_v3


Gene


Chr8


164293635


164297965


alf8

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL15 sequence v2 gene models.


175


alf9


Alfin-like-transcription factor 9 GRMZM2G017142


B73 RefGen_v3


Gene


Chr8


125066160


125069152


alf9

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome

ZmAL14 sequence v2 gene models.


176


algt1


alanine--glyoxylate aminotransferase1 GRMZM2G030571


B73 RefGen_v3


Gene


Chr1


56676074


56678959


algt1


alanine--glyoxylate aminotransferase1, algt1, alt6, rs128445321


177


alp1


aluminum-induced protein homolog1 GRMZM2G003762


B73 RefGen_v3


Gene


Chr10


4676400


4679041


alp1


ALP, alp1, csu359(alp), csu359(gfu), csu577, pco130572(712), PCO130572c leaf cDNA csu359 similar to wheat aluminum-induced protein, GenBank accession L28008


178


als1


acetolactate synthase1 GRMZM2G143357


B73 RefGen_v3


Gene


Chr4


96832612


96834891


als1

acetolactate synthase1, AHAS109, als1, Als*-109, bnl#(als), dup, dup(als1), MALSb, PZA03231, sensitive to imidazolinone herbicides; acetohydroxyacid synthase has altered herbicide rs129762878, rs55622883 , ss196415776 inhibition kinetics


179


als2


acetolactate synthase2 GRMZM2G143008


B73 RefGen_v3


Gene


Chr5


164024379


164026683


als2

dup(als2) probe. sensitive to imidazolinone herbicides; acetohydroxyacid synthase has altered acetolactate synthase2, als1, Als*-108, als2, bnl#(als), dup, dup(als2), MALSa, XA-17 herbicide inhibition kinetics


180


alt10


alanine aminotransferase10 GRMZM2G124963


B73 RefGen_v3


Gene


Chr2


212180526


212185824


alt10


alt10, idp136, rs131180249, rs131993455 putative alanine aminotransferase weakly expressed in seedling leaf (Tausta et al 2014)


181


alt4


L-alanine:2-oxoglutarate aminotransferasGRMZM2G088064


B73 RefGen_v3


Gene


Chr5


37251082


37256273


alt4

the relationship between alt4 and previously reported genes alt1, alt2 or alt3 is not clear as AlaAT, alt4, L-alanine:2-oxoglutarate aminotransferase4, rz892b(alt), uaz158, uaz158(alt) sequences for the latter were not published;


182


alt5


alanine aminotransferase5 GRMZM2G088028


B73 RefGen_v3


Gene


Chr5


37248072


37250198


alt5

AlaAT, alanine aminotransferase5, alt5, CL2764_1, CL2764_1(562), gnp_AW066742, gpm149, putative alanine aminotransferase; found in embryo (Davidson 2011), not reported in seedling PCO123780, PCO123780(562) leaf (Tausta et al 2014)


183


alt7


alanine aminotransferase7 GRMZM2G120563


B73 RefGen_v3


Gene


Chr7


1309331


1321760


alt7

AlaAT, alanine aminotransferase7, alt7, CL1839_2(547), CL1839_2b, PCO087866(528),

PCO087866b, rs131591583 bundle sheath alanine transasminase; see also alt8, alt9


184


alt8


alanine amino transferase8 GRMZM5G840582


B73 RefGen_v3


Gene


Chr2


236204010


236208701


alt8


AlaAT, alanine amino transferase8, alt8, rs129259495, rs129259505, rs129259506 bundle sheath alanine transaminase; see also alt7 and alt9


185


alt9


alanine aminotransferase9 GRMZM2G053999


B73 RefGen_v3


Gene


Chr7


165787766


165790666


alt9


AlaAT, alanine aminotransferase9, alt9, pco113489, pco113489(579), rs130683341 putative leaf alanine transminase


186


am1


ameiotic1 GRMZM5G883855


B73 RefGen_v3


Gene


Chr5


16109038


16115968


am1

affects switch to meiotic cell cycle. male and female sterility - anaphase I equatorial; alleles am1-

am1, am2, am*-485, ameiotic1, pra1 pra1(was pra1), am1-2 (was am2)


187


ami1


amidase1 GRMZM2G060400


B73 RefGen_v3


Gene


Chr2


183985910


183988519


ami1


ami1


188


ami2


amidase2 GRMZM2G137676


B73 RefGen_v3


Gene


Chr7


120006864


120009317


ami2


ami2, amidase2, ZmAMI1


189


amo1


amine oxidase1 GRMZM2G359298


B73 RefGen_v3


Gene


Chr10


103645937


103651506


amo1


amine oxidase1, amo1, primary amine oxidase-like, rz69 single copy rice cDNA rz69


190


amt1


ammonium transporter1 GRMZM2G175140


B73 RefGen_v3


Gene


Chr10


130101668


130103747


amt1


amt1, ZmAMT1;1a


191


amt2


ammonium transporter2 GRMZM2G028736


B73 RefGen_v3


Gene


Chr5


185705977


185707950


amt2


amt2, ZmAMT1;3


192


amt3


ammonium transporter3 GRMZM2G118950


B73 RefGen_v3


Gene


Chr2


28938473


28940284


amt3


amt3, ZmAMT1;1b


193


amya3


alpha amylase3 GRMZM2G138468


B73 RefGen_v3


Gene


Chr2


186911744


186913606


amya3

alpha amylase3, alpha amylase L25805, amy3, amya3, amy*-L25805, ast, ast(amy4),

ast(amyBS2)b, umc223(amy) aleurone cDNA pMAs5, 94% similarity to rice alpha amylase; possibly identical to amy1


194


amyb2


beta amylase2 GRMZM2G450125


B73 RefGen_v3


Gene


Chr1


9051958


9054939


amyb2


amy2, amyb2, beta amylase2, pco104637, PCO133818a electrophoretic mobility; monomeric


195


amyb4


beta amylase4 GRMZM2G175218


B73 RefGen_v3


Gene


Chr3


1535920


1540195


amyb4


amy4, amyb4, beta amylase4, PCO082879(199), PCO082879a sequence similar to rice BAD81275.1| putative beta-amylase PCT-BMYI per D. Lisch


196


amyb5


beta amylase5 GRMZM2G058310


B73 RefGen_v3


Gene


Chr7


155396510


155399710


amyb5

Amy2, amy5, amyb5, amy*-Z25871, ast, ast(amy3), ast(amyBS2)a, CL1598_1, cl1598_1(575),

gnp_QAH4e11, gpm343, gsy250(amy), pZMB2 enzyme and cDNA isolated; aleurone layer of germinating seed


197


an1


anther ear1 GRMZM2G081554


B73 RefGen_v3


Gene


Chr1


241277428


241285679


an1

an1, an1.5, an2.6, anther ear1, copalyl diphosphate synthase1, cpps1, cps1, rs131175334, andromonoecious dwarf, intermediate stature; few tassel branches; responds to gibberellins; ss196414714, ZmCPS2 an1-6923 includes deletion of Bz2+


A

B

C

D

E

F

G

H

I

J

K


1

short name (gene_symbol)

long name (gene_name)


gene_model


assembly_version


locus_type


chr


start


end


short name


synonyms (via maizegdb)


description via maizegdb


198


ane1


androgenic embryo1


GRMZM2G039942


B73 RefGen_v3


Gene


Chr4


222614892


222615724


ane1


AE1, androgenic embryo1, ane1, ensl002b, ZmAE1

multigene family; sequence suggests extracellular location; expressed in embryo surrounding region of developing endosperm and in basal endosperm transfer layer


199


ane3


androgenic embryo3


GRMZM2G372553


B73 RefGen_v3


Gene


Chr10


80752876


80753536


ane3


ae3, AE3, androgenic embryo3, ane3, ensl003, IDP1, ZmAE3

single copy; specifically expressed in embryo surrounding region during early stages of endosperm development


200


ans1


anthranilate synthase homolog1


GRMZM2G325131


B73 RefGen_v3


Gene


Chr2


41652488


41657690


ans1

ans1, anthranilate synthase component II, anthranilate synthase homolog1, csu65, csuM95067(ans), PCO123247a


leaf cDNA csu65 sequence similar to yeast TRP3 gene


201


ans2 anthranilate synthase component II homoGRMZM2G171383 B73 RefGen_v3 Gene Chr10 123312541 123317141 ans2 ans2, anthranilate synthase component II


202


ant1


adenine nucleotide translocator1 GRMZM5G837108


B73 RefGen_v3


Gene


Chr5


203603047


203604860


ant1

cdo507b(ant), CL2269_1, cl2269_1(446), csu26, csu26a, csu26a(ant), csu26c(ant), gnp_QAE6c03b, gnp_QBN12a02, gpm303b, gpm546, rz273(ant), rz273b, rz273b(ant),

leaf cDNA, open reading frame encodes 40,519 Da polypeptide; single site (5L, MNL 67) contradicted by two sites probed in Tropical Maize F2's by p-csuh26


203


ant2


adenine nucleotide translocator2 GRMZM2G135186


B73 RefGen_v3


Gene


Chr4


163798958


163802105


ant2

adenine nucleotide translocator2, ant2, ANT-G2, ATP*, cdo507c(ant), csu26b, csu26b(ant), rz273a, rz273a(ant), umc318b

cDNA sequence corresponds to genomic sequence; actively transcribed in basal meristem, not in green leaves


204


anx1


annexin1 GRMZM2G064993


B73 RefGen_v3


Gene


Chr6


112316067


112319639


anx1


annexin-like protein RJ4, anx1, p33, PCO072293


205


anx2


annexin2 GRMZM2G061950


B73 RefGen_v3


Gene


Chr5


208242490


208245487


anx2


anx2, gnp_QBI11g10, gpm478, p35, PCO122403


206


ao1


aldehyde oxidase1 GRMZM2G141535


B73 RefGen_v3


Gene


Chr1


286519501


286527285


ao1


aldehyde oxidase1, ao1, cl1856_2b


functionally cloned (Sekimoto et al 1997)


207


ao2


aldehyde oxidase2 GRMZM5G899851


B73 RefGen_v3


Gene


Chr5


4589117


4593360


ao2


ao2


208


ao3


aldehyde oxidase3 GRMZM2G019799


B73 RefGen_v3


Gene


Chr1


286429198


286437131


ao3

AAO3, abscisic aldehyde oxidase3, aldehyde oxidase3, ao3, GRMZM2G124260, IDP2436, pzb01403, rs131175362, ss196414838, TMR51


associated with ABA levels in silks of water-stressed plants (Setter et al 2011)


209


ao4


aldehyde oxidase4 GRMZM2G141473


B73 RefGen_v3


Gene


Chr1


286577038


286584000


ao4


ao4


210


ao5


aldehyde oxidase5 GRMZM2G406830


B73 RefGen_v3


Gene


Chr7


7451202


7456538


ao5


ao5


211


aoc1


allene oxide cyclase1 GRMZM2G077316


B73 RefGen_v3


Gene


Chr1


76740125


76741716


aoc1


allene oxide cyclase1, aoc1, AY103942, rs128475648


jasmonate pathway gene induced by herbivory


212


aos1


allene oxide synthase1 GRMZM2G067225


B73 RefGen_v3


Gene


Chr9


145603968


145606347


aos1


aos1, IDP493, PCO060855, PCO060855(700), ZmAOS2b


expression induction by herbivory and methyl jasmonate


213


aos2


allene oxide synthesis2 GRMZM2G002178


B73 RefGen_v3


Gene


Chr1


28926395


28928612


aos2


aos2, ZmAOS2a


214


aos3


allene oxide synthesis3 GRMZM2G376661


B73 RefGen_v3


Gene


Chr1


280918468


280920450


aos3


aos3


215


aos4


allene oxide synthesis4 GRMZM2G072653


B73 RefGen_v3


Gene


Chr1


280908391


280910737


aos4


aos4


216


aox1


alternative oxidase1 AC233960.1_FG002


B73 RefGen_v3


Gene


Chr5


200032552


200035241


aox1


alternative oxidase1, aox1, IM1, IMMUTANS1


primers give PCR product closely similar to alternative oxidase in other species


217


aox2


alternative oxidase2 GRMZM2G125669


B73 RefGen_v3


Gene


Chr2


12345073


12348033


aox2


alternate oxidase2, aox2, IM2, IMMUTANS2, PCO108471


primers give PCR product closely similar to alternative oxidase in other species


218


aox3


alternative oxidase3 GRMZM2G074743


B73 RefGen_v3


Gene


Chr2


12274611


12276371


aox3


alternate oxidase3, aox3


219


ap17


clathrin coat assembly protein AP17 AC195874.2_FG002


B73 RefGen_v3


Gene


Chr2


220221529


220227569


ap17


ap17, clathrin coat assembly protein AP17, pco070889, sigma 2

single copy; cDNA and genomic clones; expressed in all organs; constitutively expressed in developing embryo


220


apg1


albino or pale green mutant1 GRMZM2G082998


B73 RefGen_v3


Gene


Chr1


174010202


174012244


apg1


apg1, pco114350

ortholog of Arabidopsis At3g63410, which encodes MPBQ/MSBQ methyltransferase involved in plastoquinone synthesis (Belcher et al 2015)


221


apo1


accumulation of photosystem one1 GRMZM2G007453


B73 RefGen_v3


Gene


Chr2


9988448


9994999


apo1


apo1


plastid splicing in Arabidopsis ortholog, apo1


222


aprl1


adenosine 5'-phosphosulfate reductase-l AC189750.4_FG004


B73 RefGen_v3


Gene


Chr7


152388543


152391232


aprl1


aprl1, APRL1, PCO125975, PCO125975(574), ZmAPRL1


223


aprl2


adenosine 5'-phosphosulfate reductase-l GRMZM2G087254


B73 RefGen_v3


Gene


Chr2


203181028


203184356


aprl2


aprl2, APRL2, ZmAPRL2


224


aprl3


adenosine 5'-phosphosulfate reductase-l GRMZM2G042582


B73 RefGen_v3


Gene


Chr4


180575468


180577838


aprl3


aprl3, APRL3, ZmAPRL3


225


aprl4


adenosine 5'-phosphosulfate reductase-l GRMZM2G159535


B73 RefGen_v3


Gene


Chr5


208428136


208430824


aprl4


aprl4, APRL4, ZmAPRL4


226


aprl5


adenosine 5'-phosphosulfate reductase-l GRMZM2G085249


B73 RefGen_v3


Gene


Chr1


218147403


218155498


aprl5


aprl5, APRL5, CL36137_1, CL36137_1(71), ZmAPRL5


227


aprl6


adenosine 5'-phosphosulfate reductase6 GRMZM2G141848


B73 RefGen_v3


Gene


Chr10


24452184


24457178


aprl6


aprl6, IDP807, ZmAPRL6

member of protein disulfide isomerase family involved in protein folding, but having putative nonisomerase-like activity


228


aprl7


adenosine 5'-phosphosulfate reductase-l GRMZM2G155073


B73 RefGen_v3


Gene


Chr3


132867816


132870557


aprl7


aprl7, APRL7, ZmAPRL7


229


aprl8


adenosine 5'-phosphosulfate reductase-l GRMZM2G046231


B73 RefGen_v3


Gene


Chr1


290214394


290215834


aprl8


aprl8, APRL8, ZmAPRL8


230


aprl9


adenosine 5'-phosphosulfate reductase-l GRMZM2G025248


B73 RefGen_v3


Gene


Chr5


3553168


3555891


aprl9


aprl9, APRL9, ZmAPRL9


231


aprt1


adenine phosphoribosyltransferase1 GRMZM2G170101


B73 RefGen_v3


Gene


Chr2


31501795


31510516


aprt1


adenine phosphoribosyltransferase1, aprt1, apt1, PCO120693, pco120693(127), umi13


232


aps1


ATP sulfurylase1 GRMZM2G149952


B73 RefGen_v3


Gene


Chr1


275157705


275161519


aps1

aps1, ATP-sulfurylase 3, chloroplastic-like, bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, cl30_1d, sed1, senescence-diminished1, ZmAS1

mRNA differentially diminished in early- vs. late-senescing lines; similarity to ATP sulfurylase mRNA of Arabidopsis


233


apt1


aberrant pollen transmission1 GRMZM2G448687


B73 RefGen_v3


Gene


Chr9


129022644


129046413


apt1


apt1


Ac-tagged mutation, pollen-grain specific pollen tube shortening and twisting


234


apx1


ascorbate peroxidase homolog GRMZM2G054300


B73 RefGen_v3


Gene


Chr9


138678093


138682438


apx1


apx1, APx1, csu710e(apx), ZmAPx05


235


apx2


ascorbate peroxidase2 GRMZM2G140667


B73 RefGen_v3


Gene


Chr2


219258176


219261097


apx2

apx2, APx2 - Cytosolic Ascorbate Peroxidase, ascorbate peroxidase2, IDP162, IDP3857, IDP3884, magi72449, PCO104002a, ZmAPx02


leaf cDNA, similar to plant cytosolic ascorbate peroxidase; sequence distinct from apx1


236


apx3


ascorbate peroxidase homolog3 GRMZM2G137839


B73 RefGen_v3


Gene


Chr1


43682818


43686019


apx3


APx1, apx3, csu238a(apx), csu710a(apx), pod1, ZmAPx01


237


ara3


ras-related protein ARA-3 GRMZM2G061900


B73 RefGen_v3


Gene


Chr1


293212122


293215703


ara3


ara3, ARA-3, CL2811_2c, ZmRab8A3


238


arf1


ADP-ribosylation factor homolog1 GRMZM2G395844


B73 RefGen_v3


Gene


Chr5


3055229


3058761


arf1


ADP-ribosylation factor homolog1, arf1, gnp_QCF21f04, gpm632


cDNA similar to ARF family of GTP binding proteins


239


arftf1


ARF-transcription factor 1 GRMZM2G169820


B73 RefGen_v3


Gene


Chr1


190580078


190595543


arftf1


arf1

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


240


arftf10


ARF-transcription factor 10 GRMZM2G338259


B73 RefGen_v3


Gene


Chr3


156523681


156529660


arftf10


arf10

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


241


arftf11


ARF-transcription factor 11 GRMZM2G056120


B73 RefGen_v3


Gene


Chr3


196638145


196644110


arftf11


arf11, arf3c, auxin response factor

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


242


arftf12


ARF-transcription factor 12 GRMZM2G437460


B73 RefGen_v3


Gene


Chr3


210346707


210354569


arftf12


arf12, arf3d, auxin response factor

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


243


arftf13


ARF-transcription factor 13 GRMZM2G378580


B73 RefGen_v3


Gene


Chr4


23548742


23554591


arftf13


arf13

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


244


arftf14


ARF-transcription factor 14 GRMZM2G137413


B73 RefGen_v3


Gene


Chr4


118717709


118723692


arftf14


arf14

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


245


arftf15


ARF-transcription factor 15 GRMZM2G081406


B73 RefGen_v3


Gene


Chr4


143829841


143832631


arftf15


arf15

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


246


arftf16


ARF-transcription factor 16 GRMZM2G028980


B73 RefGen_v3


Gene


Chr4


237016081


237022029


arftf16


arf16

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


A

B

C

D

E

F

G

H

I

J

K


1

short name (gene_symbol)

long name (gene_name)


gene_model


assembly_version


locus_type


chr


start


end


short name


synonyms (via maizegdb)


description via maizegdb


247


arftf17


ARF-transcription factor 17


GRMZM2G159399


B73 RefGen_v3


Gene


Chr5


27964682


27969438


arftf17


arf17

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


248


arftf18


ARF-transcription factor 18


GRMZM2G035405


B73 RefGen_v3


Gene


Chr5


42328068


42332365


arftf18


arf18

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


249


arftf19


ARF-transcription factor 19


AC207656.3_FG002


B73 RefGen_v3


Gene


Chr5


49282509


49284911


arftf19


arf19

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


250


arftf2


ARF-transcription factor 2


GRMZM2G153233


B73 RefGen_v3


Gene


Chr1


230778452


230782861


arftf2


arf2

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


251


arftf20


ARF-transcription factor 20


GRMZM2G102845


B73 RefGen_v3


Gene


Chr5


78415886


78423936


arftf20


arf20

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


252


arftf21


ARF-transcription factor 21


GRMZM2G390641


B73 RefGen_v3


Gene


Chr6


89284779


89287980


arftf21


arf21

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


253


arftf22


ARF-transcription factor 22


GRMZM2G089640


B73 RefGen_v3


Gene


Chr6


91485004


91487958


arftf22


arf22

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


254


arftf23


ARF-transcription factor 23


GRMZM2G441325


B73 RefGen_v3


Gene


Chr6


158843020


158849314


arftf23


arf23, arf3b, auxin response factor

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


255


arftf24


ARF-transcription factor 24


GRMZM2G030710


B73 RefGen_v3


Gene


Chr6


164719893


164725158


arftf24


arf24, arf3a, auxin response factor

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


256


arftf25


ARF-transcription factor 25


GRMZM2G116557


B73 RefGen_v3


Gene


Chr8


159641546


159646951


arftf25


arf25

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


257


arftf26


ARF-transcription factor 26


GRMZM5G874163


B73 RefGen_v3


Gene


Chr8


173768820


173775129


arftf26


arf26, arf3e, auxin response factor

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


258


arftf27


ARF-transcription factor 27


GRMZM2G160005


B73 RefGen_v3


Gene


Chr9


11128329


11140405


arftf27


arf27

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


259


arftf28


ARF-transcription factor 28


GRMZM2G006042


B73 RefGen_v3


Gene


Chr10


13788443


13794457


arftf28


arf28

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


260


arftf29


ARF-transcription factor 29


GRMZM2G086949


B73 RefGen_v3


Gene


Chr10


146553165


146558259


arftf29


arf29

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


261


arftf3


ARF-transcription factor 3


GRMZM2G078274


B73 RefGen_v3


Gene


Chr2


2271404


2279360


arftf3


arf3

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


262


arftf30


ARF-transcription factor 30


GRMZM2G475882


B73 RefGen_v3


Gene


Chr10


147154383


147163265


arftf30


arf30

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


263


arftf31


ARF-transcription factor 31


GRMZM2G023813


B73 RefGen_v3


Gene


Chr10


148635880


148637733


arftf31


arf31, auxin response factor 31, B3 DNA binding domain containing protein, ZmARF31

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.. plays a key role in low P responses and root architecture regulation


264


arftf32


ARF-transcription factor 32


GRMZM2G181254


B73 RefGen_v3


Gene


Chr1


159192608


159194386


arftf32


arf32

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


265


arftf33


ARF-transcription factor 33


GRMZM2G179121


B73 RefGen_v3


Gene


Chr1


158940439


158942519


arftf33


arf33

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


266


arftf34


ARF-transcription factor 34


GRMZM2G081158


B73 RefGen_v3


Gene


Chr1


173434033


173442028


arftf34


arf34

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


267


arftf35


ARF-transcription factor 35


GRMZM2G317900


B73 RefGen_v3


Gene


Chr5


57456264


57463575


arftf35


arf35

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


268


arftf36


ARF-transcription factor 36


GRMZM2G702026


B73 RefGen_v3


Gene


Chr5


173850054


173855670


arftf36


arf36

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


269


arftf37


ARF-transcription factor 37


GRMZM2G075715


B73 RefGen_v3


Gene


Chr7


39745937


39752588


arftf37


arf37

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


270


arftf38


ARF-transcription factor 38


GRMZM2G005284


B73 RefGen_v3


Gene


Chr10


130985138


130987563


arftf38


arf38

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


271


arftf4


ARF-transcription factor 4


GRMZM2G034840


B73 RefGen_v3


Gene


Chr2


3342917


3349175


arftf4


arf4

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


272


arftf5


ARF-transcription factor 5


GRMZM5G808366


B73 RefGen_v3


Gene


Chr2


26048274


26053073


arftf5


arf5

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


273


arftf6


ARF-transcription factor 6


GRMZM2G122614


B73 RefGen_v3


Gene


Chr2


28604618


28606017


arftf6


arf6

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


274


arftf7


ARF-transcription factor 7


GRMZM2G475263


B73 RefGen_v3


Gene


Chr3


1552179


1556524


arftf7


arf7

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


275


arftf8


ARF-transcription factor 8


GRMZM2G352159


B73 RefGen_v3


Gene


Chr3


107585492


107591866


arftf8


arf8

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


276


arftf9


ARF-transcription factor 9


GRMZM2G073750


B73 RefGen_v3


Gene


Chr3


123881899


123888098


arftf9


arf9

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


277


arid1


ARID-transcription factor 1


GRMZM2G365731


B73 RefGen_v3


Gene


Chr1


236206412


236245981


arid1


AT-rich interactive domain-containing protein 1-like, IDP5983, rs131865894 , umc1085

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


278


arid10


ARID-transcription factor 10


GRMZM5G883993


B73 RefGen_v3


Gene


Chr9


100869848


100876008


arid10

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


279


arid2


ARID-transcription factor 2


GRMZM2G140156


B73 RefGen_v3


Gene


Chr2


184041779


184053401


arid2

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


280


arid3


ARID-transcription factor 3


GRMZM2G110109


B73 RefGen_v3


Gene


Chr4


162151216


162155711


arid3

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


281


arid4


ARID-transcription factor 4


GRMZM2G138976


B73 RefGen_v3


Gene


Chr7


120237787


120284629


arid4

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


282


arid5


ARID-transcription factor 5


GRMZM2G421899


B73 RefGen_v3


Gene


Chr5


202662495


202668619


arid5

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


283


arid6


ARID-transcription factor 6


GRMZM2G024976


B73 RefGen_v3


Gene


Chr5


159240339


159247522


arid6

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


284


arid7


ARID-transcription factor 7


GRMZM2G466292


B73 RefGen_v3


Gene


Chr5


65453074


65462393


arid7

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


285


arid8


ARID-transcription factor 8


GRMZM2G180654


B73 RefGen_v3


Gene


Chr6


98248764


98255015


arid8

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


286


arid9


ARID-transcription factor 9


GRMZM5G866423


B73 RefGen_v3


Gene


Chr1


209583050


209585556


arid9

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


287


arp4


actin related protein like4


GRMZM2G015384


B73 RefGen_v3


Gene


Chr1


2874117


2894252


arp4


arp4, pco093035, pco093035(3), rs131177022 , rs131192334


Ortholog of Arabidopsis ARP4 (AT1G18450)


288


arp7


Actin-related protein Like 7


GRMZM2G015861


B73 RefGen_v3


Acronym


Chr5


31838656


31847972


arp7


Actin-related protein Like 7, arp7


289


arpp0


60S acidic ribosomal protein P0


GRMZM2G066460


B73 RefGen_v3


Gene


Chr6


9206517


9209074


arpp0


arpp0, RP-P0, ZmrpP0


290


arpp1a


acidic ribosomal protein P1a


GRMZM2G032315


B73 RefGen_v3


Gene


Chr6


4596812


4609378


arpp1a


60S acidic ribosomal protein P1, arpp1a, L12, rpa1, rpl12*-T1996, rpl12*-U40147, rpp1, rpp1a


pollen cDNA similar to acidic L7/L12 ribosomal protein


291


arpp2a


acidic ribosomal protein P2a


GRMZM2G119809


B73 RefGen_v3


Gene


Chr8


72904843


72907132


arpp2a

arpp2a, arpp2a*-uaz5c06c03, arpp2a*-X86553, PCO075293b, rp2, rpa2-1, rpa*-uaz5c06c03, rpl12, rpp*-uaz5c06c03, uaz294, uaz5c06c03(gfu), uaz5c06c03(rpl12)


cDNA sequence similar to P2-type acidic ribosomal protein


292


arpp2a-2


acidic ribosomal protein P2a-2


GRMZM2G102891


B73 RefGen_v3


Gene


Chr8


72750165


72752947


arpp2a-2


arpp2a-2, rpp2a-2


293


arpp2a-3


acidic ribosomal protein P2a-3


GRMZM2G010257


B73 RefGen_v3


Gene


Chr2


2550585


2552593


arpp2a-3


arpp2a-3


294


arpp2b


acidic ribosomal protein P2b (rpp2b)


GRMZM2G114954


B73 RefGen_v3


Gene


Chr8


98106249


98110627


arpp2b


arpp2b, PCO102315, rpp2b


295


arpp3


acidic ribosomal protein P3


GRMZM2G077208


B73 RefGen_v3


Gene


Chr5


56870925


56872383


arpp3


acidic ribosomal protein P3, arpp3, PCO073423, PCO073423(400), rpp3, rpp3a


novel acidic phosphoprotein


A

B

C

D

E

F

G

H

I

J

K


1

short name (gene_symbol)

long name (gene_name)


gene_model


assembly_version


locus_type


chr


start


end


short name


synonyms (via maizegdb)


description via maizegdb


296


arpp40


acidic ribosomal protein P40


GRMZM2G126821


B73 RefGen_v3


Gene


Chr9


151935786


151938224


arpp40

acidic ribosomal protein P40, arpp40, PCO143386, PCO143386(707), rpa40, rpp40, uaz7C02D05(gfu)


vegetative meristem cDNA 7C02D05 similar to cytoplasmic ribosomal protein


297


arr1


ARR-B-transcription factor 1


GRMZM2G126834


B73 RefGen_v3


Gene


Chr9


146136871


146143251


arr1


response regulator10, ZmRR10

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


298


arr2


ARR-B-transcription factor 2


GRMZM2G409974


B73 RefGen_v3


Gene


Chr9


13465293


13469635


arr2

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


299


arr3


ARR-B-transcription factor 3


GRMZM2G099797


B73 RefGen_v3


Gene


Chr1


28417831


28422778


arr3

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


300


arr4


ARR-B-transcription factor 4


GRMZM2G360523


B73 RefGen_v3


Gene


Chr9


101990935


101999695


arr4

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


301


arr5


ARR-B-transcription factor 5


GRMZM2G133262


B73 RefGen_v3


Gene


Chr5


58834080


58845813


arr5

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


302


arr6


ARR-B-transcription factor 6


GRMZM2G177220


B73 RefGen_v3


Gene


Chr3


165939858


165943821


arr6

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


303


arr7


ARR-B-transcription factor 7


GRMZM2G100318


B73 RefGen_v3


Gene


Chr8


163129203


163133084


arr7

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


304


arr8


ARR-B-transcription factor 8


GRMZM2G479110


B73 RefGen_v3


Gene


Chr5


213780789


213785593


arr8

(Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.


305


asc1


asceapen1


GRMZM2G140633


B73 RefGen_v3


Gene


Chr7


127925177


127927750


asc1


asceapen1, CL2906_1, cyclin, IDP1668, IDP1670, IDP71, leaf cyclinD42


Recessive plants shortened, infertile with narrowed leaves; stomatal patterns altered


306


asg12a


GRMZM2G048375


B73 RefGen_v3


Gene


Chr9


148237745


148240963


asg12a


asg012, asg12, asg12a, rs131180036


genomic clone, single copy. NCBI: putative glycosyl hydrolase family 10 protein


307


asg3


GRMZM2G418289


B73 RefGen_v3


Gene


Chr1


82397413


82401819


asg3


asg3


NCBI identifies as "putative protein kinase superfamily protein"


308


asg34a(msd) GRMZM2G054267 B73 RefGen_v3 Gene Chr7 13967993 13969287 asg34a(msd) asg034, asg34a, asg34a(msd), rs131605071, umc1068


309


asg48a


GRMZM2G158342


B73 RefGen_v3


Gene


Chr3


13109108


13110869


asg48a


asg48, asg48a, flavonoid 3',5'-hydroxylase-like, rs131178361


NCBI: flavonoid 3',5'-hydroxylase-like


310


asg49


GRMZM2G003869


B73 RefGen_v3


Gene


Chr7


128171458


128175453


asg49


asg49, rs132393719, si486067f01, si486067f01(564)


NCBI: Pentatricopeptide repeat-containing protein


311


asg73


GRMZM2G122863


B73 RefGen_v3


Gene


Chr5


9339454


9342646


asg73

asg73, pco076369b, rs129988042 , rs129988055 , rs129988060 , rs131180783 , rs131180783 , rs131180784


312


ask2


aspartate kinase2


GRMZM2G052935


B73 RefGen_v3


Gene


Chr2


157355447


157361044


ask2


ask2, aspartate kinase2, LT20, Monofunctional aspartate kinase 2


lysine-threonine resistance


313


asn1


asparagine synthetase1


GRMZM2G074589


B73 RefGen_v3


Gene


Chr9


32468024


32477360


asn1


AS, asn1, AsnS1, asparagine synthetase1, zas1


cDNA sequence 70% identical to asparagine synthetase from Pisum sativum


314


asn2


asparagine synthetase2


GRMZM2G093175


B73 RefGen_v3


Gene


Chr3


229507263


229511632


asn2


asn2, AsnS2


315


asn3


asparagine synthetase3


GRMZM2G053669


B73 RefGen_v3


Gene


Chr1


45118780


45122813


asn3


asn3, AsnS3, umc1701


316


asn4


asparagine synthetase4


GRMZM2G078472


B73 RefGen_v3


Gene


Chr9


138041002


138044999


asn4


asn4, AsnS4


317

anti-sigma factor antagonist domain of SulP-like sulfate transportors91, ast91, pco089998,

ast91 anti-sigma factor antagonist domain of s GRMZM2G395114 B73 RefGen_v3 Gene Chr2 4895674 4900685 ast91 sulfate transporter 91


318


atl1


auxin transporter-like1


GRMZM2G127949


B73 RefGen_v3


Gene


Chr3


178053577


178060075


atl1


atl1, AUXIN1, auxin transporter-like protein 1, CL468_1, plt1, sparse panicle1, spp1, ZmAUX1

mutant tassels have reduced branch numbers; bald tip on ears with fewer spikelets per row, and agravitropic root growth


319


atp1


ATPase1


GRMZM2G101020


B73 RefGen_v3


Gene


Chr3


141387560


141390705


atp1


atp1, ATPase1, csu30, csu30a, csua(vatp), csuh30, sog0862a, umc308c, umc322


leaf cDNA csu30 is identical to Avena sativa vacuolar ATPase subunit


320


atp2


ATP synthase2


GRMZM2G113408


B73 RefGen_v3


Gene


Chr6


163133778


163137313


atp2


atp2, ATPase2, atpB (cp), ATP synthase2, uaz243b(atp), uaz243b(atpb)


cDNA clone


321


atp3


ATP synthase3


GRMZM2G171628


B73 RefGen_v3


Gene


Chr2


202325435


202328872


atp3


atp3, ATP synthase3, ATP synthase delta chain, csu657(atpd), pco138774, uaz7c02a03(gfu)


322


atp4


ATP synthase4


GRMZM2G128665


B73 RefGen_v3


Gene


Chr1


26825757


26828101


atp4


atp4, ZmPPR017

Chloroplast PPR-SMR protein. Activates atpB translation. Binds atpB 5'UTR. (A. Barkan, 2015). required for normal accumulation of the chloroplast ATP synthase


323


atpc1


ATP synthase chloroplast subunit1


GRMZM5G862663


B73 RefGen_v3


Gene


Chr5


208034934


208036864


atpc1


atpc1, ATP synthase chloroplast subunit1, ATP synthase delta chain

Gamma subunit of chloroplast ATP synthase (ATPC1). (A. Barkan, 2015). N-terminal amino acid sequence, cDNA sequence from clone selected using anti-delta-CF1 serum


324


atpc2


ATP synthase chloroplast subunit2


GRMZM2G048907


B73 RefGen_v3


Gene


Chr7


152868671


152870546


atpc2


atpc1, atpc2, ATP synthase chloroplast subunit2

chloroplast ATP synthase (ATPC); gamma subunit based on similarity to Arabidopsis atpc1 (Belcher et al 2015)


325


AW036917 GRMZM2G106218 B73 RefGen_v3 Gene Chr6 149672083 149678650 AW036917


326


AW231791 GRMZM2G140590 B73 RefGen_v3 Gene Chr8 114541249 114555400 AW231791 NCBI: Protein kinase superfamily protein


327


AY103622 GRMZM2G014240 B73 RefGen_v3 Gene Chr9 14328479 14333699 AY103622 NCBI: vacuolar proton pump-like protein


328


AY103944


GRMZM2G352129


B73 RefGen_v3


Gene


Chr2


31534332


31539953


AY103944


PZA01336


similar to Arabidopsis poly(A) binding protein 8


329


AY105479 GRMZM2G063754 B73 RefGen_v3 Gene Chr6 123931291 123934591 AY105479 PZA01729, rs128284500, rs55626592 , ss196416415


330


AY106040 GRMZM2G303118 B73 RefGen_v3 Gene Chr2 14837139 14848360 AY106040 AY106040, PCO125510, PZA01753, rs131175401, ss196414999


331


AY106170 GRMZM2G069676 B73 RefGen_v3 Gene Chr7 41746480 41810114 AY106170 PZA00084, rs130520204, rs55622270 , ss196416582


332


AY106313 GRMZM2G153138 B73 RefGen_v3 Gene Chr3 2070509 2079118 AY106313


333


AY106825 GRMZM2G068117 B73 RefGen_v3 Gene Chr1 293700005 293704720 AY106825 PZA00991, rs131175378, ss196414889


334


AY107034 GRMZM2G404973 B73 RefGen_v3 Gene Chr2 22692870 22695229 AY107034 PHM6111, PZA00590, rs131175411, ss196415029


335


AY107053 GRMZM2G383404 B73 RefGen_v3 Gene Chr6 120201718 120203603 AY107053 PZA01055, rs131175755, rs55626278 , ss196416403


336


AY107200 GRMZM2G085718 B73 RefGen_v3 Gene Chr4 229715408 229720104 AY107200 PZA00521, rs128282702, rs55625294 , ss196415937


337


AY107329 GRMZM2G007466 B73 RefGen_v3 Gene Chr5 183171312 183177271 AY107329 PZA01575, rs131175712, rs55623286 , ss196416231


338


AY107489 GRMZM2G394212 B73 RefGen_v3 Gene Chr1 50093597 50096783 AY107489 PHM4913, PZA00468, rs131175281, ss196414500


339


AY107496 GRMZM2G467169 B73 RefGen_v3 Gene Chr9 12108547 12115783 AY107496 PZA00466, rs128282928, rs130966566, rs55626361 , ss196417099, ss196417101


340


AY109128 GRMZM2G459811 B73 RefGen_v3 Gene Chr1 293870055 293875566 AY109128 PZA00235, rs131918087, rs131918088, rs55622861 , ss196414891, ss196414893


341


AY109534 GRMZM2G021605 B73 RefGen_v3 Gene Chr4 181259476 181262496 AY109534 AY109534, CL50733_1, PHM14618, PZA02289, rs128284122, rs55624314 , ss196415883


342


AY109543 GRMZM2G028039 B73 RefGen_v3 Gene Chr9 149430555 149437059 AY109543 AY109543, CL854_1, PZA02381, rs131175971, rs55623831 , ss196417285


343


AY109644 GRMZM2G111309 B73 RefGen_v3 Gene Chr7 148490575 148493173 AY109644 AY109644, CL12102_-1, PHM16437, PZA02004, rs128281419, ss196416687


344


AY109678 GRMZM2G110198 B73 RefGen_v3 Gene Chr1 115412522 115416244 AY109678 AY109678, PZA02070, rs131175301, rs55624850 , ss196414592


A

B

C

D

E

F

G